miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 5' -56.7 NC_002794.1 + 18746 0.73 0.578725
Target:  5'- aCGCCACGA-CGGCCGgCGGCAacGaCUCu -3'
miRNA:   3'- aGUGGUGCUaGCCGGC-GCUGUa-C-GAG- -5'
10764 5' -56.7 NC_002794.1 + 138436 0.73 0.587666
Target:  5'- -aGCCGCGGuggcggcggcgccUCGGCCuGCGACGUGgaCg -3'
miRNA:   3'- agUGGUGCU-------------AGCCGG-CGCUGUACgaG- -5'
10764 5' -56.7 NC_002794.1 + 192420 0.73 0.588661
Target:  5'- aCGCCGCGA-CGGguCCGCGGCcgGCg- -3'
miRNA:   3'- aGUGGUGCUaGCC--GGCGCUGuaCGag -5'
10764 5' -56.7 NC_002794.1 + 16301 0.73 0.588661
Target:  5'- -aGCCugG--CGGCCGCGGCcgGCUg -3'
miRNA:   3'- agUGGugCuaGCCGGCGCUGuaCGAg -5'
10764 5' -56.7 NC_002794.1 + 186290 0.73 0.597629
Target:  5'- gCACCGCGGccaggCGGCCggucgccGCGGCGcGCUCg -3'
miRNA:   3'- aGUGGUGCUa----GCCGG-------CGCUGUaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 116210 0.72 0.608617
Target:  5'- -gAUCACGGccUCGGCCGCG-CG-GCUCg -3'
miRNA:   3'- agUGGUGCU--AGCCGGCGCuGUaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 184591 0.72 0.608617
Target:  5'- -gGCCACGcgCGGCCGCGGgAUcgGCa- -3'
miRNA:   3'- agUGGUGCuaGCCGGCGCUgUA--CGag -5'
10764 5' -56.7 NC_002794.1 + 145195 0.72 0.618624
Target:  5'- gUCGCCGCGG-CGGCCcucCGGCAgcGCUCc -3'
miRNA:   3'- -AGUGGUGCUaGCCGGc--GCUGUa-CGAG- -5'
10764 5' -56.7 NC_002794.1 + 113086 0.72 0.618624
Target:  5'- gCGCCucgGCGAaCGGCgGCGGCA-GCUCc -3'
miRNA:   3'- aGUGG---UGCUaGCCGgCGCUGUaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 129925 0.72 0.628641
Target:  5'- uUCGCCaggccgugGCGA-CGGCgGCGGCGgcgGCUCu -3'
miRNA:   3'- -AGUGG--------UGCUaGCCGgCGCUGUa--CGAG- -5'
10764 5' -56.7 NC_002794.1 + 63442 0.72 0.63866
Target:  5'- aCACCACca-CGGCCGCGGCG-GCg- -3'
miRNA:   3'- aGUGGUGcuaGCCGGCGCUGUaCGag -5'
10764 5' -56.7 NC_002794.1 + 75373 0.72 0.63866
Target:  5'- cCGCCGCGGcCGGCgGCGGCGgcCUCu -3'
miRNA:   3'- aGUGGUGCUaGCCGgCGCUGUacGAG- -5'
10764 5' -56.7 NC_002794.1 + 129672 0.72 0.63866
Target:  5'- gUCAgCGCGAUCuGCuCGCGGgGUGCUg -3'
miRNA:   3'- -AGUgGUGCUAGcCG-GCGCUgUACGAg -5'
10764 5' -56.7 NC_002794.1 + 116128 0.72 0.648675
Target:  5'- cCGCCGCGG-CGGCgGCGGCGgcgGC-Ca -3'
miRNA:   3'- aGUGGUGCUaGCCGgCGCUGUa--CGaG- -5'
10764 5' -56.7 NC_002794.1 + 59204 0.71 0.658676
Target:  5'- aCGCgCACGucggcgucUCGGCCGCGGCGcgcgaGCUCu -3'
miRNA:   3'- aGUG-GUGCu-------AGCCGGCGCUGUa----CGAG- -5'
10764 5' -56.7 NC_002794.1 + 44854 0.71 0.668658
Target:  5'- cCACCACGucGUCGaGCCGCaGACGcUGCa- -3'
miRNA:   3'- aGUGGUGC--UAGC-CGGCG-CUGU-ACGag -5'
10764 5' -56.7 NC_002794.1 + 180900 0.71 0.678611
Target:  5'- -gGCCGCGGacUCGGCCGCGgucucGCcgGCg- -3'
miRNA:   3'- agUGGUGCU--AGCCGGCGC-----UGuaCGag -5'
10764 5' -56.7 NC_002794.1 + 117702 0.71 0.678611
Target:  5'- aCGCCGCGA-CGG-CGUGGCA-GCUCc -3'
miRNA:   3'- aGUGGUGCUaGCCgGCGCUGUaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 91881 0.71 0.688527
Target:  5'- -gGCgGCGG-CGGCCGCGACGaGCa- -3'
miRNA:   3'- agUGgUGCUaGCCGGCGCUGUaCGag -5'
10764 5' -56.7 NC_002794.1 + 145601 0.71 0.688527
Target:  5'- cUC-CCGCGGagUCGGgCGCGACGaggaGCUCg -3'
miRNA:   3'- -AGuGGUGCU--AGCCgGCGCUGUa---CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.