miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 5' -56.7 NC_002794.1 + 130394 0.71 0.688527
Target:  5'- cCGCCugGcuGUCGgacGCCGCGAcCAUGUUCc -3'
miRNA:   3'- aGUGGugC--UAGC---CGGCGCU-GUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 145601 0.71 0.688527
Target:  5'- cUC-CCGCGGagUCGGgCGCGACGaggaGCUCg -3'
miRNA:   3'- -AGuGGUGCU--AGCCgGCGCUGUa---CGAG- -5'
10764 5' -56.7 NC_002794.1 + 134816 0.71 0.688527
Target:  5'- aCGCCGcCGAUCGGuCCaGCGACA-GCg- -3'
miRNA:   3'- aGUGGU-GCUAGCC-GG-CGCUGUaCGag -5'
10764 5' -56.7 NC_002794.1 + 112503 0.71 0.698399
Target:  5'- gUACCGCGAgCGGUCGCGG--UGCUg -3'
miRNA:   3'- aGUGGUGCUaGCCGGCGCUguACGAg -5'
10764 5' -56.7 NC_002794.1 + 17245 0.71 0.698399
Target:  5'- cCACCcuuCGA-CGGCgGCGACccgGCUCg -3'
miRNA:   3'- aGUGGu--GCUaGCCGgCGCUGua-CGAG- -5'
10764 5' -56.7 NC_002794.1 + 113874 0.71 0.708217
Target:  5'- -aGgCGCGcUCGGCCGCGGCGcGCgUCg -3'
miRNA:   3'- agUgGUGCuAGCCGGCGCUGUaCG-AG- -5'
10764 5' -56.7 NC_002794.1 + 189206 0.7 0.717973
Target:  5'- aCACCACGAagUCGGuCCGCaccACccGCUCc -3'
miRNA:   3'- aGUGGUGCU--AGCC-GGCGc--UGuaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 191003 0.7 0.717973
Target:  5'- gCGUCGCGAUCGGCCGUucGAUcgGCa- -3'
miRNA:   3'- aGUGGUGCUAGCCGGCG--CUGuaCGag -5'
10764 5' -56.7 NC_002794.1 + 42186 0.7 0.717973
Target:  5'- cCGCCACGAUCGGCCGaaACucGC-Cg -3'
miRNA:   3'- aGUGGUGCUAGCCGGCgcUGuaCGaG- -5'
10764 5' -56.7 NC_002794.1 + 95756 0.7 0.717973
Target:  5'- gUACuCGCGGggcggCGGCCGCGACGgcgGC-Cg -3'
miRNA:   3'- aGUG-GUGCUa----GCCGGCGCUGUa--CGaG- -5'
10764 5' -56.7 NC_002794.1 + 12795 0.7 0.717973
Target:  5'- aCGugACGAUCGGcCCGgGGCccGUGCUCg -3'
miRNA:   3'- aGUggUGCUAGCC-GGCgCUG--UACGAG- -5'
10764 5' -56.7 NC_002794.1 + 64811 0.7 0.727659
Target:  5'- aCGCCGCGGaCGGCgGCGAgCcgGCg- -3'
miRNA:   3'- aGUGGUGCUaGCCGgCGCU-GuaCGag -5'
10764 5' -56.7 NC_002794.1 + 141600 0.7 0.737267
Target:  5'- gUCGCCG-GG-CGGCUcgGCGACcgGCUCg -3'
miRNA:   3'- -AGUGGUgCUaGCCGG--CGCUGuaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 53302 0.7 0.737267
Target:  5'- -uGCCgaGCGGUCGGCCGgcgccgcgaGAUcgGCUCg -3'
miRNA:   3'- agUGG--UGCUAGCCGGCg--------CUGuaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 18519 0.7 0.737267
Target:  5'- -gACCGCGAacgCGGCCGCGAac-GCg- -3'
miRNA:   3'- agUGGUGCUa--GCCGGCGCUguaCGag -5'
10764 5' -56.7 NC_002794.1 + 156408 0.7 0.737267
Target:  5'- gCGCCGCGGccgCGGCCaCGGCcgGCg- -3'
miRNA:   3'- aGUGGUGCUa--GCCGGcGCUGuaCGag -5'
10764 5' -56.7 NC_002794.1 + 107217 0.7 0.746786
Target:  5'- gCGCCGcCGggCGGCgCGCGACGgggGCg- -3'
miRNA:   3'- aGUGGU-GCuaGCCG-GCGCUGUa--CGag -5'
10764 5' -56.7 NC_002794.1 + 21873 0.7 0.746786
Target:  5'- --uCCGCGAggcCGGCCGCGGgGUGUcCg -3'
miRNA:   3'- aguGGUGCUa--GCCGGCGCUgUACGaG- -5'
10764 5' -56.7 NC_002794.1 + 192010 0.7 0.756209
Target:  5'- -aGCgGCGGU-GGCCGCGGC-UGCUg -3'
miRNA:   3'- agUGgUGCUAgCCGGCGCUGuACGAg -5'
10764 5' -56.7 NC_002794.1 + 145546 0.7 0.756209
Target:  5'- gCGCCcCGAgCGGCC-CGACcgGUUCg -3'
miRNA:   3'- aGUGGuGCUaGCCGGcGCUGuaCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.