miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 5' -56.7 NC_002794.1 + 85364 0.66 0.917973
Target:  5'- gCAUCAUG-UCGuGCUuguGCGAaCAUGCUCa -3'
miRNA:   3'- aGUGGUGCuAGC-CGG---CGCU-GUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 14908 0.66 0.917414
Target:  5'- gCGCUcgaucgaGCGGgcucgCGGUCcCGACGUGCUCu -3'
miRNA:   3'- aGUGG-------UGCUa----GCCGGcGCUGUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 15050 0.66 0.912853
Target:  5'- uUCAUCGCGGucaucggucUCGGCCucuaccGCGACuaccgacagcgguguUGCUCg -3'
miRNA:   3'- -AGUGGUGCU---------AGCCGG------CGCUGu--------------ACGAG- -5'
10764 5' -56.7 NC_002794.1 + 40410 0.66 0.912273
Target:  5'- gUCGCgG-GGUCGGCCGgCGACucUGCa- -3'
miRNA:   3'- -AGUGgUgCUAGCCGGC-GCUGu-ACGag -5'
10764 5' -56.7 NC_002794.1 + 23937 0.66 0.912273
Target:  5'- -gAUC-CGAgccCGGCCGCGGCGcacuugGCUCc -3'
miRNA:   3'- agUGGuGCUa--GCCGGCGCUGUa-----CGAG- -5'
10764 5' -56.7 NC_002794.1 + 55290 0.66 0.912273
Target:  5'- -gGCgACGAgggCGGCgGCGGCGUcGCg- -3'
miRNA:   3'- agUGgUGCUa--GCCGgCGCUGUA-CGag -5'
10764 5' -56.7 NC_002794.1 + 54986 0.66 0.912273
Target:  5'- cCGCCGCGGcgaCGGCgGCGACucgccggGCg- -3'
miRNA:   3'- aGUGGUGCUa--GCCGgCGCUGua-----CGag -5'
10764 5' -56.7 NC_002794.1 + 102405 0.66 0.912273
Target:  5'- gUCuuCCGCGAcgCGGCCGUGGCcgagGC-Cg -3'
miRNA:   3'- -AGu-GGUGCUa-GCCGGCGCUGua--CGaG- -5'
10764 5' -56.7 NC_002794.1 + 102626 0.66 0.91169
Target:  5'- gCACCugGCGGUcauccgcCGGCUgGCGGCGcGCUCg -3'
miRNA:   3'- aGUGG--UGCUA-------GCCGG-CGCUGUaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 89753 0.66 0.908743
Target:  5'- uUCGCgGCGAUUGGCagcucCGCGACGUcggggacaugccggaGUUCc -3'
miRNA:   3'- -AGUGgUGCUAGCCG-----GCGCUGUA---------------CGAG- -5'
10764 5' -56.7 NC_002794.1 + 34721 0.66 0.906345
Target:  5'- gCGCCACGAggcgcgggCGGCCGCagaGCGcGCg- -3'
miRNA:   3'- aGUGGUGCUa-------GCCGGCGc--UGUaCGag -5'
10764 5' -56.7 NC_002794.1 + 41357 0.66 0.906345
Target:  5'- gUCACCGCcGUCGGCCuucgcgcucGCGGCGc-CUCc -3'
miRNA:   3'- -AGUGGUGcUAGCCGG---------CGCUGUacGAG- -5'
10764 5' -56.7 NC_002794.1 + 63817 0.66 0.906345
Target:  5'- gCACCgacuucGCGAUCGGCCGCu-CGaaCUCa -3'
miRNA:   3'- aGUGG------UGCUAGCCGGCGcuGUacGAG- -5'
10764 5' -56.7 NC_002794.1 + 90665 0.66 0.906345
Target:  5'- gCGCCGuuggGGcCGGCCGCGugGcUGUUCg -3'
miRNA:   3'- aGUGGUg---CUaGCCGGCGCugU-ACGAG- -5'
10764 5' -56.7 NC_002794.1 + 108418 0.66 0.906345
Target:  5'- cCACCACGG-CGcccaccCCGCGACcgGCg- -3'
miRNA:   3'- aGUGGUGCUaGCc-----GGCGCUGuaCGag -5'
10764 5' -56.7 NC_002794.1 + 125909 0.66 0.906345
Target:  5'- cUCGCC-----UGGCCGCGACucacgcUGCUCg -3'
miRNA:   3'- -AGUGGugcuaGCCGGCGCUGu-----ACGAG- -5'
10764 5' -56.7 NC_002794.1 + 99806 0.66 0.906345
Target:  5'- gCGCCGCGGgcgccggcgccgUCGGCC--GACcUGCUCu -3'
miRNA:   3'- aGUGGUGCU------------AGCCGGcgCUGuACGAG- -5'
10764 5' -56.7 NC_002794.1 + 111433 0.66 0.906345
Target:  5'- cCGCCA-GAUCGGCaguCGgGGCGgguucUGCUCu -3'
miRNA:   3'- aGUGGUgCUAGCCG---GCgCUGU-----ACGAG- -5'
10764 5' -56.7 NC_002794.1 + 74087 0.66 0.906345
Target:  5'- cUCGCCGa-GUCGggacaGCUGCGGC-UGCUCa -3'
miRNA:   3'- -AGUGGUgcUAGC-----CGGCGCUGuACGAG- -5'
10764 5' -56.7 NC_002794.1 + 52632 0.66 0.905739
Target:  5'- cCGCCGCG-UCGaacgggagccggaGCgGCGGCAgGCUCu -3'
miRNA:   3'- aGUGGUGCuAGC-------------CGgCGCUGUaCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.