miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 5' -56.7 NC_002794.1 + 90281 0.66 0.905739
Target:  5'- gCGCgCGCGGUCGaGCuCGCcGACGUuccguugGCUCg -3'
miRNA:   3'- aGUG-GUGCUAGC-CG-GCG-CUGUA-------CGAG- -5'
10764 5' -56.7 NC_002794.1 + 101345 0.67 0.900192
Target:  5'- aUCACCACG--CGcCCGUGGcCGUGUUCg -3'
miRNA:   3'- -AGUGGUGCuaGCcGGCGCU-GUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 153929 0.67 0.900192
Target:  5'- --uCCGCGAUC-GCCGCGgACAcucgcugGCUCu -3'
miRNA:   3'- aguGGUGCUAGcCGGCGC-UGUa------CGAG- -5'
10764 5' -56.7 NC_002794.1 + 184630 0.67 0.900192
Target:  5'- gCGuCCACGAUCGGCguCGCGuCGgcgGCg- -3'
miRNA:   3'- aGU-GGUGCUAGCCG--GCGCuGUa--CGag -5'
10764 5' -56.7 NC_002794.1 + 14478 0.67 0.898935
Target:  5'- gCGCCGCGcucgcuguucgCGGCgGCGGCccgcGCUCg -3'
miRNA:   3'- aGUGGUGCua---------GCCGgCGCUGua--CGAG- -5'
10764 5' -56.7 NC_002794.1 + 79436 0.67 0.893817
Target:  5'- -gGCgGCGG-CGGCgGCGACcgGCg- -3'
miRNA:   3'- agUGgUGCUaGCCGgCGCUGuaCGag -5'
10764 5' -56.7 NC_002794.1 + 103407 0.67 0.893817
Target:  5'- gCACCACG-UCGGgCaGCGccGCGUGCa- -3'
miRNA:   3'- aGUGGUGCuAGCCgG-CGC--UGUACGag -5'
10764 5' -56.7 NC_002794.1 + 143113 0.67 0.893817
Target:  5'- -aGCCcCGcUCGGCCGUGGCGcagGuCUCg -3'
miRNA:   3'- agUGGuGCuAGCCGGCGCUGUa--C-GAG- -5'
10764 5' -56.7 NC_002794.1 + 99721 0.67 0.893817
Target:  5'- --uUCGCGAcCGGCCGU-ACGUGCUg -3'
miRNA:   3'- aguGGUGCUaGCCGGCGcUGUACGAg -5'
10764 5' -56.7 NC_002794.1 + 182947 0.67 0.893817
Target:  5'- gCGCCGgGcUCGaGCCGaCGGCGgccgGCUCc -3'
miRNA:   3'- aGUGGUgCuAGC-CGGC-GCUGUa---CGAG- -5'
10764 5' -56.7 NC_002794.1 + 145774 0.67 0.893817
Target:  5'- gCGCCACGcggaGUCGuCCcCGGCcgGCUCg -3'
miRNA:   3'- aGUGGUGC----UAGCcGGcGCUGuaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 188075 0.67 0.893817
Target:  5'- gUCACCGuCGGuUCGGCCaaGuAC-UGCUCg -3'
miRNA:   3'- -AGUGGU-GCU-AGCCGGcgC-UGuACGAG- -5'
10764 5' -56.7 NC_002794.1 + 154075 0.67 0.891205
Target:  5'- aUCGgCACGAUCGGCC-CGAaaacgaaucugGCUUg -3'
miRNA:   3'- -AGUgGUGCUAGCCGGcGCUgua--------CGAG- -5'
10764 5' -56.7 NC_002794.1 + 140095 0.67 0.887222
Target:  5'- aCGuCCAUGGUCGGCgGCGAUcgacgGCg- -3'
miRNA:   3'- aGU-GGUGCUAGCCGgCGCUGua---CGag -5'
10764 5' -56.7 NC_002794.1 + 82863 0.67 0.887222
Target:  5'- -gACCGCGAcCGcGaCCGCGAcCGUGCg- -3'
miRNA:   3'- agUGGUGCUaGC-C-GGCGCU-GUACGag -5'
10764 5' -56.7 NC_002794.1 + 191659 0.67 0.883161
Target:  5'- cCGCCGgGGgacggcgccggcagCGGCgGCGGCGUGCccUCg -3'
miRNA:   3'- aGUGGUgCUa-------------GCCGgCGCUGUACG--AG- -5'
10764 5' -56.7 NC_002794.1 + 50662 0.67 0.880411
Target:  5'- ---aCAUGG-CGGCCGCGGC--GCUCg -3'
miRNA:   3'- agugGUGCUaGCCGGCGCUGuaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 104409 0.67 0.880411
Target:  5'- cCGCCGCGGccucggccUCGGCCGcCGGCccGgaCg -3'
miRNA:   3'- aGUGGUGCU--------AGCCGGC-GCUGuaCgaG- -5'
10764 5' -56.7 NC_002794.1 + 78154 0.67 0.880411
Target:  5'- aCGCCGC--UCGaGCCGCGAgc-GCUCg -3'
miRNA:   3'- aGUGGUGcuAGC-CGGCGCUguaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 188974 0.67 0.880411
Target:  5'- aCGCCGCccagcUCGGCCaccagccaGCGGCA-GCUCu -3'
miRNA:   3'- aGUGGUGcu---AGCCGG--------CGCUGUaCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.