miRNA display CGI


Results 61 - 80 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 5' -56.7 NC_002794.1 + 127449 0.67 0.879718
Target:  5'- cCGCUcgACGGugacuacccccccUCGGCCGCGACcaccgccGCUCu -3'
miRNA:   3'- aGUGG--UGCU-------------AGCCGGCGCUGua-----CGAG- -5'
10764 5' -56.7 NC_002794.1 + 35723 0.67 0.873389
Target:  5'- cCACCugGccuccggCGGCCGCG-CGU-CUCa -3'
miRNA:   3'- aGUGGugCua-----GCCGGCGCuGUAcGAG- -5'
10764 5' -56.7 NC_002794.1 + 180014 0.67 0.873389
Target:  5'- -gGCCACGAcgaCGGCCGCGGCc----- -3'
miRNA:   3'- agUGGUGCUa--GCCGGCGCUGuacgag -5'
10764 5' -56.7 NC_002794.1 + 131508 0.67 0.873389
Target:  5'- gUCAUCACGAccUCGcCCGUGAUcgGCg- -3'
miRNA:   3'- -AGUGGUGCU--AGCcGGCGCUGuaCGag -5'
10764 5' -56.7 NC_002794.1 + 50761 0.67 0.873389
Target:  5'- cCGCCcCGggCGGCgGCGACG-GCg- -3'
miRNA:   3'- aGUGGuGCuaGCCGgCGCUGUaCGag -5'
10764 5' -56.7 NC_002794.1 + 131879 0.67 0.872675
Target:  5'- gCGCCGCGGccucaucUCGGUCGCGcGCggGCa- -3'
miRNA:   3'- aGUGGUGCU-------AGCCGGCGC-UGuaCGag -5'
10764 5' -56.7 NC_002794.1 + 39536 0.67 0.866159
Target:  5'- cCACCugGGgcugcugugCGGCCucuGCGGCgcccuguaccccGUGCUCa -3'
miRNA:   3'- aGUGGugCUa--------GCCGG---CGCUG------------UACGAG- -5'
10764 5' -56.7 NC_002794.1 + 154359 0.67 0.866159
Target:  5'- cUCcCgCGCGGUCcaGGCCGCGGCGgcgGCg- -3'
miRNA:   3'- -AGuG-GUGCUAG--CCGGCGCUGUa--CGag -5'
10764 5' -56.7 NC_002794.1 + 137603 0.67 0.866159
Target:  5'- cCGCCGCcggCGGUCGCGGCG-GCg- -3'
miRNA:   3'- aGUGGUGcuaGCCGGCGCUGUaCGag -5'
10764 5' -56.7 NC_002794.1 + 12186 0.67 0.866159
Target:  5'- aCGCCGCcg-CGGCCG-GGCGccGCUCg -3'
miRNA:   3'- aGUGGUGcuaGCCGGCgCUGUa-CGAG- -5'
10764 5' -56.7 NC_002794.1 + 128681 0.67 0.866159
Target:  5'- aUCGCCGCGG-CGGUC-CGGag-GCUCg -3'
miRNA:   3'- -AGUGGUGCUaGCCGGcGCUguaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 145847 0.67 0.863951
Target:  5'- gUCGCCACGcUCgacgagccgccgagGGCCGCGACcgGaccgCg -3'
miRNA:   3'- -AGUGGUGCuAG--------------CCGGCGCUGuaCga--G- -5'
10764 5' -56.7 NC_002794.1 + 37827 0.68 0.858728
Target:  5'- gUCACgGCGAcggCGGCUaacgugGCGACcagGCUCu -3'
miRNA:   3'- -AGUGgUGCUa--GCCGG------CGCUGua-CGAG- -5'
10764 5' -56.7 NC_002794.1 + 37884 0.68 0.858728
Target:  5'- -gGCgGCGGgggcggUGGCgGCGGCAgcgGCUCg -3'
miRNA:   3'- agUGgUGCUa-----GCCGgCGCUGUa--CGAG- -5'
10764 5' -56.7 NC_002794.1 + 87958 0.68 0.858728
Target:  5'- cCGCCGCGAUacgGGuaGCGACcuguAUGCUUc -3'
miRNA:   3'- aGUGGUGCUAg--CCggCGCUG----UACGAG- -5'
10764 5' -56.7 NC_002794.1 + 117663 0.68 0.858728
Target:  5'- gCGCCACGcgCGGCgGCG-CGuacUGCa- -3'
miRNA:   3'- aGUGGUGCuaGCCGgCGCuGU---ACGag -5'
10764 5' -56.7 NC_002794.1 + 100312 0.68 0.858728
Target:  5'- cCGCCgcuggcACGcgCGGCCGgcgcaCGGCcgGCUCu -3'
miRNA:   3'- aGUGG------UGCuaGCCGGC-----GCUGuaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 11937 0.68 0.858728
Target:  5'- -gAUCGCGAUC-GCgGUGAgCGUGCUCu -3'
miRNA:   3'- agUGGUGCUAGcCGgCGCU-GUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 121798 0.68 0.858728
Target:  5'- cCACCGCGAcCGGCCgGCG-CcUGC-Cg -3'
miRNA:   3'- aGUGGUGCUaGCCGG-CGCuGuACGaG- -5'
10764 5' -56.7 NC_002794.1 + 56302 0.68 0.851101
Target:  5'- gCGCgCGCGGUcgcggucgcuggCGGCCGUGGCcgGCg- -3'
miRNA:   3'- aGUG-GUGCUA------------GCCGGCGCUGuaCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.