miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 5' -56.7 NC_002794.1 + 1194 0.68 0.826276
Target:  5'- cCACCGgccauauaagggcCGAUCGGggccCCGgGGCGUGUUCu -3'
miRNA:   3'- aGUGGU-------------GCUAGCC----GGCgCUGUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 10341 0.66 0.923446
Target:  5'- gCGCCGCGAcCGGgUGacgGAC-UGCUCg -3'
miRNA:   3'- aGUGGUGCUaGCCgGCg--CUGuACGAG- -5'
10764 5' -56.7 NC_002794.1 + 11937 0.68 0.858728
Target:  5'- -gAUCGCGAUC-GCgGUGAgCGUGCUCu -3'
miRNA:   3'- agUGGUGCUAGcCGgCGCU-GUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 12186 0.67 0.866159
Target:  5'- aCGCCGCcg-CGGCCG-GGCGccGCUCg -3'
miRNA:   3'- aGUGGUGcuaGCCGGCgCUGUa-CGAG- -5'
10764 5' -56.7 NC_002794.1 + 12795 0.7 0.717973
Target:  5'- aCGugACGAUCGGcCCGgGGCccGUGCUCg -3'
miRNA:   3'- aGUggUGCUAGCC-GGCgCUG--UACGAG- -5'
10764 5' -56.7 NC_002794.1 + 14478 0.67 0.898935
Target:  5'- gCGCCGCGcucgcuguucgCGGCgGCGGCccgcGCUCg -3'
miRNA:   3'- aGUGGUGCua---------GCCGgCGCUGua--CGAG- -5'
10764 5' -56.7 NC_002794.1 + 14657 0.69 0.810244
Target:  5'- gCGCCGCGGcgUCGGUccgacuCGCGGCGgcggucgcgcUGCUCc -3'
miRNA:   3'- aGUGGUGCU--AGCCG------GCGCUGU----------ACGAG- -5'
10764 5' -56.7 NC_002794.1 + 14908 0.66 0.917414
Target:  5'- gCGCUcgaucgaGCGGgcucgCGGUCcCGACGUGCUCu -3'
miRNA:   3'- aGUGG-------UGCUa----GCCGGcGCUGUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 15050 0.66 0.912853
Target:  5'- uUCAUCGCGGucaucggucUCGGCCucuaccGCGACuaccgacagcgguguUGCUCg -3'
miRNA:   3'- -AGUGGUGCU---------AGCCGG------CGCUGu--------------ACGAG- -5'
10764 5' -56.7 NC_002794.1 + 16301 0.73 0.588661
Target:  5'- -aGCCugG--CGGCCGCGGCcgGCUg -3'
miRNA:   3'- agUGGugCuaGCCGGCGCUGuaCGAg -5'
10764 5' -56.7 NC_002794.1 + 17245 0.71 0.698399
Target:  5'- cCACCcuuCGA-CGGCgGCGACccgGCUCg -3'
miRNA:   3'- aGUGGu--GCUaGCCGgCGCUGua-CGAG- -5'
10764 5' -56.7 NC_002794.1 + 17614 0.68 0.818755
Target:  5'- cCACCuCGAUCcccGCCGCGGCGaGCg- -3'
miRNA:   3'- aGUGGuGCUAGc--CGGCGCUGUaCGag -5'
10764 5' -56.7 NC_002794.1 + 18519 0.7 0.737267
Target:  5'- -gACCGCGAacgCGGCCGCGAac-GCg- -3'
miRNA:   3'- agUGGUGCUa--GCCGGCGCUguaCGag -5'
10764 5' -56.7 NC_002794.1 + 18746 0.73 0.578725
Target:  5'- aCGCCACGA-CGGCCGgCGGCAacGaCUCu -3'
miRNA:   3'- aGUGGUGCUaGCCGGC-GCUGUa-C-GAG- -5'
10764 5' -56.7 NC_002794.1 + 21873 0.7 0.746786
Target:  5'- --uCCGCGAggcCGGCCGCGGgGUGUcCg -3'
miRNA:   3'- aguGGUGCUa--GCCGGCGCUgUACGaG- -5'
10764 5' -56.7 NC_002794.1 + 23937 0.66 0.912273
Target:  5'- -gAUC-CGAgccCGGCCGCGGCGcacuugGCUCc -3'
miRNA:   3'- agUGGuGCUa--GCCGGCGCUGUa-----CGAG- -5'
10764 5' -56.7 NC_002794.1 + 32301 0.73 0.558968
Target:  5'- cCGCCGCGG-CGGCCGCG-CcgGC-Cg -3'
miRNA:   3'- aGUGGUGCUaGCCGGCGCuGuaCGaG- -5'
10764 5' -56.7 NC_002794.1 + 32807 0.82 0.193879
Target:  5'- uUCGCCGCGAccgucgucuucgUCGGCCucGCGGCcgGCUCa -3'
miRNA:   3'- -AGUGGUGCU------------AGCCGG--CGCUGuaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 34113 0.68 0.827103
Target:  5'- -gACCGCGA-CGuCCGCGACcUGUUCc -3'
miRNA:   3'- agUGGUGCUaGCcGGCGCUGuACGAG- -5'
10764 5' -56.7 NC_002794.1 + 34721 0.66 0.906345
Target:  5'- gCGCCACGAggcgcgggCGGCCGCagaGCGcGCg- -3'
miRNA:   3'- aGUGGUGCUa-------GCCGGCGc--UGUaCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.