miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 5' -56.7 NC_002794.1 + 35723 0.67 0.873389
Target:  5'- cCACCugGccuccggCGGCCGCG-CGU-CUCa -3'
miRNA:   3'- aGUGGugCua-----GCCGGCGCuGUAcGAG- -5'
10764 5' -56.7 NC_002794.1 + 37827 0.68 0.858728
Target:  5'- gUCACgGCGAcggCGGCUaacgugGCGACcagGCUCu -3'
miRNA:   3'- -AGUGgUGCUa--GCCGG------CGCUGua-CGAG- -5'
10764 5' -56.7 NC_002794.1 + 37884 0.68 0.858728
Target:  5'- -gGCgGCGGgggcggUGGCgGCGGCAgcgGCUCg -3'
miRNA:   3'- agUGgUGCUa-----GCCGgCGCUGUa--CGAG- -5'
10764 5' -56.7 NC_002794.1 + 39536 0.67 0.866159
Target:  5'- cCACCugGGgcugcugugCGGCCucuGCGGCgcccuguaccccGUGCUCa -3'
miRNA:   3'- aGUGGugCUa--------GCCGG---CGCUG------------UACGAG- -5'
10764 5' -56.7 NC_002794.1 + 40410 0.66 0.912273
Target:  5'- gUCGCgG-GGUCGGCCGgCGACucUGCa- -3'
miRNA:   3'- -AGUGgUgCUAGCCGGC-GCUGu-ACGag -5'
10764 5' -56.7 NC_002794.1 + 41357 0.66 0.906345
Target:  5'- gUCACCGCcGUCGGCCuucgcgcucGCGGCGc-CUCc -3'
miRNA:   3'- -AGUGGUGcUAGCCGG---------CGCUGUacGAG- -5'
10764 5' -56.7 NC_002794.1 + 42186 0.7 0.717973
Target:  5'- cCGCCACGAUCGGCCGaaACucGC-Cg -3'
miRNA:   3'- aGUGGUGCUAGCCGGCgcUGuaCGaG- -5'
10764 5' -56.7 NC_002794.1 + 42233 0.68 0.818755
Target:  5'- -aGCCGCGAgaCGGCgGCGACGaaCUCc -3'
miRNA:   3'- agUGGUGCUa-GCCGgCGCUGUacGAG- -5'
10764 5' -56.7 NC_002794.1 + 44698 0.69 0.792765
Target:  5'- cCACCGCcgccCGGCCGCGACcgcgGCg- -3'
miRNA:   3'- aGUGGUGcua-GCCGGCGCUGua--CGag -5'
10764 5' -56.7 NC_002794.1 + 44854 0.71 0.668658
Target:  5'- cCACCACGucGUCGaGCCGCaGACGcUGCa- -3'
miRNA:   3'- aGUGGUGC--UAGC-CGGCG-CUGU-ACGag -5'
10764 5' -56.7 NC_002794.1 + 46334 0.68 0.851101
Target:  5'- gUCGCCGCGGaCGGCUc---CAUGCUCu -3'
miRNA:   3'- -AGUGGUGCUaGCCGGcgcuGUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 49015 0.77 0.377997
Target:  5'- gCGCCGCGG-CGGCCGCGGCGUcGUcCg -3'
miRNA:   3'- aGUGGUGCUaGCCGGCGCUGUA-CGaG- -5'
10764 5' -56.7 NC_002794.1 + 49406 0.78 0.339237
Target:  5'- -gGCCACGG-CGGCCGCGGCGgcgGCg- -3'
miRNA:   3'- agUGGUGCUaGCCGGCGCUGUa--CGag -5'
10764 5' -56.7 NC_002794.1 + 50662 0.67 0.880411
Target:  5'- ---aCAUGG-CGGCCGCGGC--GCUCg -3'
miRNA:   3'- agugGUGCUaGCCGGCGCUGuaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 50726 0.69 0.801578
Target:  5'- uUCGCCGCccgGggCGGCCGCcucGACucGCUCg -3'
miRNA:   3'- -AGUGGUG---CuaGCCGGCG---CUGuaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 50761 0.67 0.873389
Target:  5'- cCGCCcCGggCGGCgGCGACG-GCg- -3'
miRNA:   3'- aGUGGuGCuaGCCGgCGCUGUaCGag -5'
10764 5' -56.7 NC_002794.1 + 52632 0.66 0.905739
Target:  5'- cCGCCGCG-UCGaacgggagccggaGCgGCGGCAgGCUCu -3'
miRNA:   3'- aGUGGUGCuAGC-------------CGgCGCUGUaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 52764 0.69 0.792765
Target:  5'- gCGCCGCGGcccgGGCCGCGGgAUcgugacGCUCg -3'
miRNA:   3'- aGUGGUGCUag--CCGGCGCUgUA------CGAG- -5'
10764 5' -56.7 NC_002794.1 + 53302 0.7 0.737267
Target:  5'- -uGCCgaGCGGUCGGCCGgcgccgcgaGAUcgGCUCg -3'
miRNA:   3'- agUGG--UGCUAGCCGGCg--------CUGuaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 54986 0.66 0.912273
Target:  5'- cCGCCGCGGcgaCGGCgGCGACucgccggGCg- -3'
miRNA:   3'- aGUGGUGCUa--GCCGgCGCUGua-----CGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.