miRNA display CGI


Results 41 - 60 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 5' -56.7 NC_002794.1 + 55290 0.66 0.912273
Target:  5'- -gGCgACGAgggCGGCgGCGGCGUcGCg- -3'
miRNA:   3'- agUGgUGCUa--GCCGgCGCUGUA-CGag -5'
10764 5' -56.7 NC_002794.1 + 56302 0.68 0.851101
Target:  5'- gCGCgCGCGGUcgcggucgcuggCGGCCGUGGCcgGCg- -3'
miRNA:   3'- aGUG-GUGCUA------------GCCGGCGCUGuaCGag -5'
10764 5' -56.7 NC_002794.1 + 56340 0.66 0.921828
Target:  5'- aCGCgGCGAagagcagcucgaagaGGCgGuCGACGUGCUCg -3'
miRNA:   3'- aGUGgUGCUag-------------CCGgC-GCUGUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 58303 0.75 0.481372
Target:  5'- gCACCACGAgaccGCCGCGcucugcacgccgcGCGUGCUCg -3'
miRNA:   3'- aGUGGUGCUagc-CGGCGC-------------UGUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 59204 0.71 0.658676
Target:  5'- aCGCgCACGucggcgucUCGGCCGCGGCGcgcgaGCUCu -3'
miRNA:   3'- aGUG-GUGCu-------AGCCGGCGCUGUa----CGAG- -5'
10764 5' -56.7 NC_002794.1 + 61870 0.66 0.922909
Target:  5'- aCGCCGCGcgccgucGUCGGCgccgCGCGGCGaGCg- -3'
miRNA:   3'- aGUGGUGC-------UAGCCG----GCGCUGUaCGag -5'
10764 5' -56.7 NC_002794.1 + 63442 0.72 0.63866
Target:  5'- aCACCACca-CGGCCGCGGCG-GCg- -3'
miRNA:   3'- aGUGGUGcuaGCCGGCGCUGUaCGag -5'
10764 5' -56.7 NC_002794.1 + 63671 0.66 0.923446
Target:  5'- -gACgACGAgcgCGGCCGCGGCGa---- -3'
miRNA:   3'- agUGgUGCUa--GCCGGCGCUGUacgag -5'
10764 5' -56.7 NC_002794.1 + 63817 0.66 0.906345
Target:  5'- gCACCgacuucGCGAUCGGCCGCu-CGaaCUCa -3'
miRNA:   3'- aGUGG------UGCUAGCCGGCGcuGUacGAG- -5'
10764 5' -56.7 NC_002794.1 + 64811 0.7 0.727659
Target:  5'- aCGCCGCGGaCGGCgGCGAgCcgGCg- -3'
miRNA:   3'- aGUGGUGCUaGCCGgCGCU-GuaCGag -5'
10764 5' -56.7 NC_002794.1 + 66854 0.76 0.402641
Target:  5'- gUCGgCGCGGcgaGGCCGCGGCGUGCg- -3'
miRNA:   3'- -AGUgGUGCUag-CCGGCGCUGUACGag -5'
10764 5' -56.7 NC_002794.1 + 67005 0.69 0.810244
Target:  5'- aUUACagACGAguccggCGGCgGCGGCcgGCUCc -3'
miRNA:   3'- -AGUGg-UGCUa-----GCCGgCGCUGuaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 69802 0.68 0.827103
Target:  5'- cCGCCGCGuagcccgCcGCCGCGACcgGCg- -3'
miRNA:   3'- aGUGGUGCua-----GcCGGCGCUGuaCGag -5'
10764 5' -56.7 NC_002794.1 + 71737 0.73 0.568825
Target:  5'- cCGCCACGccgaaGGCCGCcGCcgGCUCu -3'
miRNA:   3'- aGUGGUGCuag--CCGGCGcUGuaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 73311 0.69 0.783814
Target:  5'- -aACCGCGA-CGGCgaCGCGuACcUGCUCg -3'
miRNA:   3'- agUGGUGCUaGCCG--GCGC-UGuACGAG- -5'
10764 5' -56.7 NC_002794.1 + 74087 0.66 0.906345
Target:  5'- cUCGCCGa-GUCGggacaGCUGCGGC-UGCUCa -3'
miRNA:   3'- -AGUGGUgcUAGC-----CGGCGCUGuACGAG- -5'
10764 5' -56.7 NC_002794.1 + 75373 0.72 0.63866
Target:  5'- cCGCCGCGGcCGGCgGCGGCGgcCUCu -3'
miRNA:   3'- aGUGGUGCUaGCCGgCGCUGUacGAG- -5'
10764 5' -56.7 NC_002794.1 + 78154 0.67 0.880411
Target:  5'- aCGCCGC--UCGaGCCGCGAgc-GCUCg -3'
miRNA:   3'- aGUGGUGcuAGC-CGGCGCUguaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 78409 0.66 0.930723
Target:  5'- cUCGCCGCGAcucUccgcucccggcgucaCGGUCGCGGCGgacgcggacgcGCUCg -3'
miRNA:   3'- -AGUGGUGCU---A---------------GCCGGCGCUGUa----------CGAG- -5'
10764 5' -56.7 NC_002794.1 + 79436 0.67 0.893817
Target:  5'- -gGCgGCGG-CGGCgGCGACcgGCg- -3'
miRNA:   3'- agUGgUGCUaGCCGgCGCUGuaCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.