miRNA display CGI


Results 1 - 20 of 176 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 5' -56.7 NC_002794.1 + 193325 0.66 0.923446
Target:  5'- gCGCC-CGAUCGGUUccagGCGGuCGUGCg- -3'
miRNA:   3'- aGUGGuGCUAGCCGG----CGCU-GUACGag -5'
10764 5' -56.7 NC_002794.1 + 192491 0.74 0.491626
Target:  5'- cCGCCuCGucccaCGGCCGCGACA-GCUCc -3'
miRNA:   3'- aGUGGuGCua---GCCGGCGCUGUaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 192420 0.73 0.588661
Target:  5'- aCGCCGCGA-CGGguCCGCGGCcgGCg- -3'
miRNA:   3'- aGUGGUGCUaGCC--GGCGCUGuaCGag -5'
10764 5' -56.7 NC_002794.1 + 192010 0.7 0.756209
Target:  5'- -aGCgGCGGU-GGCCGCGGC-UGCUg -3'
miRNA:   3'- agUGgUGCUAgCCGGCGCUGuACGAg -5'
10764 5' -56.7 NC_002794.1 + 191659 0.67 0.883161
Target:  5'- cCGCCGgGGgacggcgccggcagCGGCgGCGGCGUGCccUCg -3'
miRNA:   3'- aGUGGUgCUa-------------GCCGgCGCUGUACG--AG- -5'
10764 5' -56.7 NC_002794.1 + 191003 0.7 0.717973
Target:  5'- gCGUCGCGAUCGGCCGUucGAUcgGCa- -3'
miRNA:   3'- aGUGGUGCUAGCCGGCG--CUGuaCGag -5'
10764 5' -56.7 NC_002794.1 + 190346 0.66 0.928175
Target:  5'- -aACUGCGucaggucGUCGGCCGCGcggcgcagcGgGUGCUCc -3'
miRNA:   3'- agUGGUGC-------UAGCCGGCGC---------UgUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 189206 0.7 0.717973
Target:  5'- aCACCACGAagUCGGuCCGCaccACccGCUCc -3'
miRNA:   3'- aGUGGUGCU--AGCC-GGCGc--UGuaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 188974 0.67 0.880411
Target:  5'- aCGCCGCccagcUCGGCCaccagccaGCGGCA-GCUCu -3'
miRNA:   3'- aGUGGUGcu---AGCCGG--------CGCUGUaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 188075 0.67 0.893817
Target:  5'- gUCACCGuCGGuUCGGCCaaGuAC-UGCUCg -3'
miRNA:   3'- -AGUGGU-GCU-AGCCGGcgC-UGuACGAG- -5'
10764 5' -56.7 NC_002794.1 + 186335 0.68 0.827103
Target:  5'- aCACgAuCGAcggCGGCgGCGACGUGCcCg -3'
miRNA:   3'- aGUGgU-GCUa--GCCGgCGCUGUACGaG- -5'
10764 5' -56.7 NC_002794.1 + 186290 0.73 0.597629
Target:  5'- gCACCGCGGccaggCGGCCggucgccGCGGCGcGCUCg -3'
miRNA:   3'- aGUGGUGCUa----GCCGG-------CGCUGUaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 185468 0.74 0.491626
Target:  5'- aCGCCGCGGgcggCGGCCGCGGCGa---- -3'
miRNA:   3'- aGUGGUGCUa---GCCGGCGCUGUacgag -5'
10764 5' -56.7 NC_002794.1 + 185187 0.69 0.783814
Target:  5'- gUCGgCGCGGUCGG-CGCGGuCAUcgcgGCUCg -3'
miRNA:   3'- -AGUgGUGCUAGCCgGCGCU-GUA----CGAG- -5'
10764 5' -56.7 NC_002794.1 + 184630 0.67 0.900192
Target:  5'- gCGuCCACGAUCGGCguCGCGuCGgcgGCg- -3'
miRNA:   3'- aGU-GGUGCUAGCCG--GCGCuGUa--CGag -5'
10764 5' -56.7 NC_002794.1 + 184591 0.72 0.608617
Target:  5'- -gGCCACGcgCGGCCGCGGgAUcgGCa- -3'
miRNA:   3'- agUGGUGCuaGCCGGCGCUgUA--CGag -5'
10764 5' -56.7 NC_002794.1 + 184035 0.66 0.921828
Target:  5'- gCACCGCGcgCagcgcgcggucgcgGGCCGCGGCGaagcgGCa- -3'
miRNA:   3'- aGUGGUGCuaG--------------CCGGCGCUGUa----CGag -5'
10764 5' -56.7 NC_002794.1 + 183828 0.66 0.917973
Target:  5'- cCACCGCcuccGUC-GCCGaCGACAgGCUCu -3'
miRNA:   3'- aGUGGUGc---UAGcCGGC-GCUGUaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 182947 0.67 0.893817
Target:  5'- gCGCCGgGcUCGaGCCGaCGGCGgccgGCUCc -3'
miRNA:   3'- aGUGGUgCuAGC-CGGC-GCUGUa---CGAG- -5'
10764 5' -56.7 NC_002794.1 + 181573 0.66 0.917973
Target:  5'- -aAUCAgGAUCgacaggcugcgGGCCGCGACcgGgUCg -3'
miRNA:   3'- agUGGUgCUAG-----------CCGGCGCUGuaCgAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.