miRNA display CGI


Results 21 - 40 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10764 5' -56.7 NC_002794.1 + 181286 0.65 0.931225
Target:  5'- aCGCCGCGAacaccacccccaGGCCgagcaggaucagcGCGACGUGCa- -3'
miRNA:   3'- aGUGGUGCUag----------CCGG-------------CGCUGUACGag -5'
10764 5' -56.7 NC_002794.1 + 180900 0.71 0.678611
Target:  5'- -gGCCGCGGacUCGGCCGCGgucucGCcgGCg- -3'
miRNA:   3'- agUGGUGCU--AGCCGGCGC-----UGuaCGag -5'
10764 5' -56.7 NC_002794.1 + 180014 0.67 0.873389
Target:  5'- -gGCCACGAcgaCGGCCGCGGCc----- -3'
miRNA:   3'- agUGGUGCUa--GCCGGCGCUGuacgag -5'
10764 5' -56.7 NC_002794.1 + 179984 0.66 0.928689
Target:  5'- -aGCCaagGCGGU-GGCCGCGACG-GCg- -3'
miRNA:   3'- agUGG---UGCUAgCCGGCGCUGUaCGag -5'
10764 5' -56.7 NC_002794.1 + 156408 0.7 0.737267
Target:  5'- gCGCCGCGGccgCGGCCaCGGCcgGCg- -3'
miRNA:   3'- aGUGGUGCUa--GCCGGcGCUGuaCGag -5'
10764 5' -56.7 NC_002794.1 + 154359 0.67 0.866159
Target:  5'- cUCcCgCGCGGUCcaGGCCGCGGCGgcgGCg- -3'
miRNA:   3'- -AGuG-GUGCUAG--CCGGCGCUGUa--CGag -5'
10764 5' -56.7 NC_002794.1 + 154120 0.74 0.491626
Target:  5'- gUCACCGgGAUCGGCgGCGAUcagGCg- -3'
miRNA:   3'- -AGUGGUgCUAGCCGgCGCUGua-CGag -5'
10764 5' -56.7 NC_002794.1 + 154075 0.67 0.891205
Target:  5'- aUCGgCACGAUCGGCC-CGAaaacgaaucugGCUUg -3'
miRNA:   3'- -AGUgGUGCUAGCCGGcGCUgua--------CGAG- -5'
10764 5' -56.7 NC_002794.1 + 153929 0.67 0.900192
Target:  5'- --uCCGCGAUC-GCCGCGgACAcucgcugGCUCu -3'
miRNA:   3'- aguGGUGCUAGcCGGCGC-UGUa------CGAG- -5'
10764 5' -56.7 NC_002794.1 + 153658 0.69 0.801578
Target:  5'- aCGCCGCGucCGGCCGCcgguuGugAgGCUCg -3'
miRNA:   3'- aGUGGUGCuaGCCGGCG-----CugUaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 152579 0.69 0.774731
Target:  5'- cCGCCGCGG-CGGCCGCcACGucccUGCg- -3'
miRNA:   3'- aGUGGUGCUaGCCGGCGcUGU----ACGag -5'
10764 5' -56.7 NC_002794.1 + 151599 0.69 0.783814
Target:  5'- cCGCCGCGGgcccgcgguuccUCGGCUGaCGGCcgGCa- -3'
miRNA:   3'- aGUGGUGCU------------AGCCGGC-GCUGuaCGag -5'
10764 5' -56.7 NC_002794.1 + 150594 0.68 0.827103
Target:  5'- gCGCC-CGAggaCGGCCGgGcGCcgGCUCu -3'
miRNA:   3'- aGUGGuGCUa--GCCGGCgC-UGuaCGAG- -5'
10764 5' -56.7 NC_002794.1 + 149405 0.68 0.851101
Target:  5'- gUCGCCGCGcgUGuguGCCGUGugGUGUg- -3'
miRNA:   3'- -AGUGGUGCuaGC---CGGCGCugUACGag -5'
10764 5' -56.7 NC_002794.1 + 148626 0.68 0.827103
Target:  5'- -gAUCugGGUCuccgaucGCgGCGGCGUGCUCg -3'
miRNA:   3'- agUGGugCUAGc------CGgCGCUGUACGAG- -5'
10764 5' -56.7 NC_002794.1 + 148143 0.66 0.928689
Target:  5'- cCGCCgggGCGAgggCGGUCGCGACGgaaggagggGgUCg -3'
miRNA:   3'- aGUGG---UGCUa--GCCGGCGCUGUa--------CgAG- -5'
10764 5' -56.7 NC_002794.1 + 146994 0.68 0.851101
Target:  5'- cCGCCGgcCGAcgUCGGCgGCGGCGgccgccggcGCUCg -3'
miRNA:   3'- aGUGGU--GCU--AGCCGgCGCUGUa--------CGAG- -5'
10764 5' -56.7 NC_002794.1 + 146916 0.7 0.765527
Target:  5'- gCGCgGgGAUCGGCCG-GACGgagagcGCUCg -3'
miRNA:   3'- aGUGgUgCUAGCCGGCgCUGUa-----CGAG- -5'
10764 5' -56.7 NC_002794.1 + 145847 0.67 0.863951
Target:  5'- gUCGCCACGcUCgacgagccgccgagGGCCGCGACcgGaccgCg -3'
miRNA:   3'- -AGUGGUGCuAG--------------CCGGCGCUGuaCga--G- -5'
10764 5' -56.7 NC_002794.1 + 145774 0.67 0.893817
Target:  5'- gCGCCACGcggaGUCGuCCcCGGCcgGCUCg -3'
miRNA:   3'- aGUGGUGC----UAGCcGGcGCUGuaCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.