Results 41 - 60 of 176 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10764 | 5' | -56.7 | NC_002794.1 | + | 131400 | 0.66 | 0.928689 |
Target: 5'- gUCAUCACGGccUCGcCCGUGAUcgGCa- -3' miRNA: 3'- -AGUGGUGCU--AGCcGGCGCUGuaCGag -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 179984 | 0.66 | 0.928689 |
Target: 5'- -aGCCaagGCGGU-GGCCGCGACG-GCg- -3' miRNA: 3'- agUGG---UGCUAgCCGGCGCUGUaCGag -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 90393 | 0.66 | 0.928689 |
Target: 5'- cCGuCCGCGAUCgGGCUGC-ACGUGagcaUCg -3' miRNA: 3'- aGU-GGUGCUAG-CCGGCGcUGUACg---AG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 148143 | 0.66 | 0.928689 |
Target: 5'- cCGCCgggGCGAgggCGGUCGCGACGgaaggagggGgUCg -3' miRNA: 3'- aGUGG---UGCUa--GCCGGCGCUGUa--------CgAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 78409 | 0.66 | 0.930723 |
Target: 5'- cUCGCCGCGAcucUccgcucccggcgucaCGGUCGCGGCGgacgcggacgcGCUCg -3' miRNA: 3'- -AGUGGUGCU---A---------------GCCGGCGCUGUa----------CGAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 61870 | 0.66 | 0.922909 |
Target: 5'- aCGCCGCGcgccgucGUCGGCgccgCGCGGCGaGCg- -3' miRNA: 3'- aGUGGUGC-------UAGCCG----GCGCUGUaCGag -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 184035 | 0.66 | 0.921828 |
Target: 5'- gCACCGCGcgCagcgcgcggucgcgGGCCGCGGCGaagcgGCa- -3' miRNA: 3'- aGUGGUGCuaG--------------CCGGCGCUGUa----CGag -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 89753 | 0.66 | 0.908743 |
Target: 5'- uUCGCgGCGAUUGGCagcucCGCGACGUcggggacaugccggaGUUCc -3' miRNA: 3'- -AGUGgUGCUAGCCG-----GCGCUGUA---------------CGAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 40410 | 0.66 | 0.912273 |
Target: 5'- gUCGCgG-GGUCGGCCGgCGACucUGCa- -3' miRNA: 3'- -AGUGgUgCUAGCCGGC-GCUGu-ACGag -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 23937 | 0.66 | 0.912273 |
Target: 5'- -gAUC-CGAgccCGGCCGCGGCGcacuugGCUCc -3' miRNA: 3'- agUGGuGCUa--GCCGGCGCUGUa-----CGAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 55290 | 0.66 | 0.912273 |
Target: 5'- -gGCgACGAgggCGGCgGCGGCGUcGCg- -3' miRNA: 3'- agUGgUGCUa--GCCGgCGCUGUA-CGag -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 54986 | 0.66 | 0.912273 |
Target: 5'- cCGCCGCGGcgaCGGCgGCGACucgccggGCg- -3' miRNA: 3'- aGUGGUGCUa--GCCGgCGCUGua-----CGag -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 102405 | 0.66 | 0.912273 |
Target: 5'- gUCuuCCGCGAcgCGGCCGUGGCcgagGC-Cg -3' miRNA: 3'- -AGu-GGUGCUa-GCCGGCGCUGua--CGaG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 15050 | 0.66 | 0.912853 |
Target: 5'- uUCAUCGCGGucaucggucUCGGCCucuaccGCGACuaccgacagcgguguUGCUCg -3' miRNA: 3'- -AGUGGUGCU---------AGCCGG------CGCUGu--------------ACGAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 85364 | 0.66 | 0.917973 |
Target: 5'- gCAUCAUG-UCGuGCUuguGCGAaCAUGCUCa -3' miRNA: 3'- aGUGGUGCuAGC-CGG---CGCU-GUACGAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 14908 | 0.66 | 0.917414 |
Target: 5'- gCGCUcgaucgaGCGGgcucgCGGUCcCGACGUGCUCu -3' miRNA: 3'- aGUGG-------UGCUa----GCCGGcGCUGUACGAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 181573 | 0.66 | 0.917973 |
Target: 5'- -aAUCAgGAUCgacaggcugcgGGCCGCGACcgGgUCg -3' miRNA: 3'- agUGGUgCUAG-----------CCGGCGCUGuaCgAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 114703 | 0.66 | 0.917973 |
Target: 5'- cUC-CUGCGAgacggaCGGCgGCGGCGgcgGCUCc -3' miRNA: 3'- -AGuGGUGCUa-----GCCGgCGCUGUa--CGAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 121831 | 0.66 | 0.917973 |
Target: 5'- aUCGCUACGA-CGGCCaaGGCAaGUUUc -3' miRNA: 3'- -AGUGGUGCUaGCCGGcgCUGUaCGAG- -5' |
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10764 | 5' | -56.7 | NC_002794.1 | + | 183828 | 0.66 | 0.917973 |
Target: 5'- cCACCGCcuccGUC-GCCGaCGACAgGCUCu -3' miRNA: 3'- aGUGGUGc---UAGcCGGC-GCUGUaCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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