miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10765 3' -52.1 NC_002794.1 + 192199 0.66 0.994862
Target:  5'- aGCAacGGACGaCGUC----UCGAAGAGCg -3'
miRNA:   3'- -CGU--CCUGCgGCAGaaccAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 115613 0.66 0.994786
Target:  5'- cGCccGGCGCCGggaggcgGGUCAGgugguucAGGGCg -3'
miRNA:   3'- -CGucCUGCGGCagaa---CCAGUU-------UCUCG- -5'
10765 3' -52.1 NC_002794.1 + 140089 0.66 0.994058
Target:  5'- aGCAGGACGUCca--UGGUCGGc-GGCg -3'
miRNA:   3'- -CGUCCUGCGGcagaACCAGUUucUCG- -5'
10765 3' -52.1 NC_002794.1 + 74766 0.66 0.993885
Target:  5'- aCAGcGCGCuCGUCgaguacgacgaGGUCAAAGGGUu -3'
miRNA:   3'- cGUCcUGCG-GCAGaa---------CCAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 148136 0.66 0.993155
Target:  5'- cGCGGGGcCGCCGg---GG-CGAGG-GCg -3'
miRNA:   3'- -CGUCCU-GCGGCagaaCCaGUUUCuCG- -5'
10765 3' -52.1 NC_002794.1 + 69906 0.66 0.993155
Target:  5'- cGUAGG-UGCCGagUUcGUCGAAGaAGCg -3'
miRNA:   3'- -CGUCCuGCGGCagAAcCAGUUUC-UCG- -5'
10765 3' -52.1 NC_002794.1 + 137735 0.66 0.993155
Target:  5'- uCAGGcgauGgGCCGacgCUUGGaacggcggcUCGAAGAGCa -3'
miRNA:   3'- cGUCC----UgCGGCa--GAACC---------AGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 12105 0.66 0.993155
Target:  5'- aCGGGACGCCGU---GG-CA--GAGCa -3'
miRNA:   3'- cGUCCUGCGGCAgaaCCaGUuuCUCG- -5'
10765 3' -52.1 NC_002794.1 + 110278 0.66 0.993155
Target:  5'- gGC-GGcCGCCGUCcucgGGcCcGAGAGCc -3'
miRNA:   3'- -CGuCCuGCGGCAGaa--CCaGuUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 106363 0.66 0.992764
Target:  5'- gGCGGG-CGCCGguucgcgCGGAGGGCa -3'
miRNA:   3'- -CGUCCuGCGGCagaaccaGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 140187 0.66 0.992145
Target:  5'- uCGGcGACGgCGUC---GUCGAGGGGCg -3'
miRNA:   3'- cGUC-CUGCgGCAGaacCAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 114237 0.66 0.991021
Target:  5'- uCAGcGCGUCGaggUGGUgAAAGAGCg -3'
miRNA:   3'- cGUCcUGCGGCagaACCAgUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 152957 0.66 0.989774
Target:  5'- --cGGAcaCGCCGacgcCUUGGUCGGGGcGCu -3'
miRNA:   3'- cguCCU--GCGGCa---GAACCAGUUUCuCG- -5'
10765 3' -52.1 NC_002794.1 + 115697 0.66 0.989774
Target:  5'- aGgAGGAC-CCGUC--GGUCGcguacAGGAGCc -3'
miRNA:   3'- -CgUCCUGcGGCAGaaCCAGU-----UUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 181544 0.67 0.988395
Target:  5'- gGCGGGcCGgCGcUCUcGGUCGccGGGCc -3'
miRNA:   3'- -CGUCCuGCgGC-AGAaCCAGUuuCUCG- -5'
10765 3' -52.1 NC_002794.1 + 128467 0.67 0.986877
Target:  5'- cCAGGACGaCCgGUCaccgGGUCGcggaccGGGGGCc -3'
miRNA:   3'- cGUCCUGC-GG-CAGaa--CCAGU------UUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 117814 0.67 0.986877
Target:  5'- aGCAGcGACuGCuuCGUCa-GGUCGcAGAGCa -3'
miRNA:   3'- -CGUC-CUG-CG--GCAGaaCCAGUuUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 118242 0.67 0.986877
Target:  5'- -gAGGAUGUCGgcgggCUggaGGUCGGccGGGGCg -3'
miRNA:   3'- cgUCCUGCGGCa----GAa--CCAGUU--UCUCG- -5'
10765 3' -52.1 NC_002794.1 + 137348 0.67 0.986877
Target:  5'- gGCucGGCGUCGUCggGGUCuucuucGAGCc -3'
miRNA:   3'- -CGucCUGCGGCAGaaCCAGuuu---CUCG- -5'
10765 3' -52.1 NC_002794.1 + 50382 0.67 0.985895
Target:  5'- gGCAGGAcCGagucguaaaacaaccCCGUCUUGGcaCAGAccGAGCc -3'
miRNA:   3'- -CGUCCU-GC---------------GGCAGAACCa-GUUU--CUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.