miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10765 3' -52.1 NC_002794.1 + 101063 1.14 0.004424
Target:  5'- uGCAGGACGCCGUCUUGGUCAAAGAGCu -3'
miRNA:   3'- -CGUCCUGCGGCAGAACCAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 44580 0.76 0.697585
Target:  5'- cGCGGGAccgagccacCGCCGccuUCUUGGgcgcCGAGGGGCa -3'
miRNA:   3'- -CGUCCU---------GCGGC---AGAACCa---GUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 116437 0.75 0.717707
Target:  5'- uCAGGACGCCGaCggUGGcgaugaCGAAGAGCg -3'
miRNA:   3'- cGUCCUGCGGCaGa-ACCa-----GUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 149754 0.75 0.72766
Target:  5'- gGCGGGAcCGCUGUCUcGGcCuguuGGAGCg -3'
miRNA:   3'- -CGUCCU-GCGGCAGAaCCaGuu--UCUCG- -5'
10765 3' -52.1 NC_002794.1 + 123795 0.74 0.766548
Target:  5'- gGCGGuGGCGCCGUUcgGGggcgCGGAcGAGCa -3'
miRNA:   3'- -CGUC-CUGCGGCAGaaCCa---GUUU-CUCG- -5'
10765 3' -52.1 NC_002794.1 + 160307 0.74 0.794477
Target:  5'- uGguGGAUGuUCGUCUUGGggcuGGAGCg -3'
miRNA:   3'- -CguCCUGC-GGCAGAACCaguuUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 74124 0.73 0.81237
Target:  5'- aGCAGGccgccgcCGCCGUCUcccUGGUCGAc-AGCa -3'
miRNA:   3'- -CGUCCu------GCGGCAGA---ACCAGUUucUCG- -5'
10765 3' -52.1 NC_002794.1 + 118953 0.71 0.890702
Target:  5'- uGCAGGAagaGCCG-CgugacGGUCAGguggcGGAGCa -3'
miRNA:   3'- -CGUCCUg--CGGCaGaa---CCAGUU-----UCUCG- -5'
10765 3' -52.1 NC_002794.1 + 136516 0.71 0.897358
Target:  5'- aGCGGGGCGagGUagagaUGGUUGAAGAGCc -3'
miRNA:   3'- -CGUCCUGCggCAga---ACCAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 156431 0.71 0.903149
Target:  5'- gGCGGGugagagaccggucGCGCCGaaggCgguUGGUUAGGGGGCg -3'
miRNA:   3'- -CGUCC-------------UGCGGCa---Ga--ACCAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 55816 0.71 0.903781
Target:  5'- gGCGcGGGCGCgCG-CUgaUGG-CGAAGAGCa -3'
miRNA:   3'- -CGU-CCUGCG-GCaGA--ACCaGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 117630 0.71 0.903781
Target:  5'- aCAGGGCGCCGaccgCgcggccccGGaCGAAGAGCg -3'
miRNA:   3'- cGUCCUGCGGCa---Gaa------CCaGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 91055 0.71 0.913563
Target:  5'- aCGGGGCGCgCGUCgucauguacgccgUGGugggcuacgggcUCAAGGAGCu -3'
miRNA:   3'- cGUCCUGCG-GCAGa------------ACC------------AGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 138290 0.71 0.915913
Target:  5'- aGCGGGugGCgGcCUUGGcccgcacgcugUCGGGGAGg -3'
miRNA:   3'- -CGUCCugCGgCaGAACC-----------AGUUUCUCg -5'
10765 3' -52.1 NC_002794.1 + 128545 0.7 0.937287
Target:  5'- uCGGGuGCGCCGUCcugcUGGUCAucGcGCu -3'
miRNA:   3'- cGUCC-UGCGGCAGa---ACCAGUuuCuCG- -5'
10765 3' -52.1 NC_002794.1 + 105472 0.7 0.942027
Target:  5'- -uGGGACgacgaGCCGUCgucuccGGUCGuGGAGCc -3'
miRNA:   3'- cgUCCUG-----CGGCAGaa----CCAGUuUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 53672 0.7 0.946528
Target:  5'- cCAGGACGgauCCGUCc--GUCAAacGGAGCg -3'
miRNA:   3'- cGUCCUGC---GGCAGaacCAGUU--UCUCG- -5'
10765 3' -52.1 NC_002794.1 + 189301 0.69 0.950377
Target:  5'- aGgAGGugGUCGUgcaguucgggcagC-UGGUCGGGGGGCa -3'
miRNA:   3'- -CgUCCugCGGCA-------------GaACCAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 111761 0.69 0.950793
Target:  5'- cGCGcGGCGCCGUCggGGcgggcucguUCGucAGGAGCg -3'
miRNA:   3'- -CGUcCUGCGGCAGaaCC---------AGU--UUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 184689 0.69 0.95364
Target:  5'- cCAGGACGCCGgCggagGGUCGuccgucggcucuuccGAGCg -3'
miRNA:   3'- cGUCCUGCGGCaGaa--CCAGUuu-------------CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.