miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10765 3' -52.1 NC_002794.1 + 70265 0.67 0.985209
Target:  5'- aGCGacGGAgGCCG-CgaaGGcCGGAGAGCa -3'
miRNA:   3'- -CGU--CCUgCGGCaGaa-CCaGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 138013 0.67 0.983385
Target:  5'- cGCAGGuACGCCaccaguuccgaGUCgUGGUCGcAGuAGUg -3'
miRNA:   3'- -CGUCC-UGCGG-----------CAGaACCAGUuUC-UCG- -5'
10765 3' -52.1 NC_002794.1 + 35654 0.67 0.983385
Target:  5'- --cGGGCGCCcgGUCUccgacgUGGUCAAcGAGg -3'
miRNA:   3'- cguCCUGCGG--CAGA------ACCAGUUuCUCg -5'
10765 3' -52.1 NC_002794.1 + 94023 0.67 0.981396
Target:  5'- gGCGGGuucCGCCGgcg-GGcCcGAGAGCg -3'
miRNA:   3'- -CGUCCu--GCGGCagaaCCaGuUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 113379 0.67 0.981396
Target:  5'- uGCGGGcCGCCGUCgugcaGGcgcugCAGcacccGGAGCu -3'
miRNA:   3'- -CGUCCuGCGGCAGaa---CCa----GUU-----UCUCG- -5'
10765 3' -52.1 NC_002794.1 + 10232 0.68 0.979234
Target:  5'- aGCAGGugacccCGCCGUCUcGuGUCcguucGAGCu -3'
miRNA:   3'- -CGUCCu-----GCGGCAGAaC-CAGuuu--CUCG- -5'
10765 3' -52.1 NC_002794.1 + 160724 0.68 0.979234
Target:  5'- --cGGAUGCCGUgUUGGaUUGgugguugggcGAGAGCg -3'
miRNA:   3'- cguCCUGCGGCAgAACC-AGU----------UUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 116052 0.68 0.979234
Target:  5'- cGCAGGGgggaGCgCGaCUggGGUCGcGGAGCg -3'
miRNA:   3'- -CGUCCUg---CG-GCaGAa-CCAGUuUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 179581 0.68 0.97689
Target:  5'- --uGGAgGCCuUCUUGcgcaagaucacGUCGAGGAGCg -3'
miRNA:   3'- cguCCUgCGGcAGAAC-----------CAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 112346 0.68 0.974358
Target:  5'- cCGGcGGCGCCGgcggCggGG-CGGGGAGCu -3'
miRNA:   3'- cGUC-CUGCGGCa---GaaCCaGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 112390 0.68 0.971629
Target:  5'- cGCAGGGCGgCGaUCUUGGcgCGcuGcAGCc -3'
miRNA:   3'- -CGUCCUGCgGC-AGAACCa-GUuuC-UCG- -5'
10765 3' -52.1 NC_002794.1 + 76952 0.68 0.971629
Target:  5'- cGCGGaGACGCCGUCcggccGGccCGccGAGCu -3'
miRNA:   3'- -CGUC-CUGCGGCAGaa---CCa-GUuuCUCG- -5'
10765 3' -52.1 NC_002794.1 + 141436 0.68 0.971629
Target:  5'- -gGGGGCGCCGg---GGgcgCcGGGAGCg -3'
miRNA:   3'- cgUCCUGCGGCagaaCCa--GuUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 142939 0.68 0.970772
Target:  5'- aGCAGGugGCCGaggggaagUCggcGGcgucgagcuccucgUCGAGGGGCu -3'
miRNA:   3'- -CGUCCugCGGC--------AGaa-CC--------------AGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 180202 0.68 0.968698
Target:  5'- aGCAGGAUGUCGUCcaGGUuCAAgcuggaaagaacAGAcGCg -3'
miRNA:   3'- -CGUCCUGCGGCAGaaCCA-GUU------------UCU-CG- -5'
10765 3' -52.1 NC_002794.1 + 124391 0.69 0.965558
Target:  5'- cGCGGcGGCG-CGUCgccGGUCGucGGGGCg -3'
miRNA:   3'- -CGUC-CUGCgGCAGaa-CCAGUu-UCUCG- -5'
10765 3' -52.1 NC_002794.1 + 156186 0.69 0.965558
Target:  5'- --cGGACGCgucaucggaGUCgccGGUCGGAGGGCc -3'
miRNA:   3'- cguCCUGCGg--------CAGaa-CCAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 61913 0.69 0.965558
Target:  5'- cGCAGcGACGUCGUCacccUCGAGGAGa -3'
miRNA:   3'- -CGUC-CUGCGGCAGaaccAGUUUCUCg -5'
10765 3' -52.1 NC_002794.1 + 4873 0.69 0.95751
Target:  5'- cGUAGGugGUgGUCUcGGUCAAguucuccuucuucuGGAcGCu -3'
miRNA:   3'- -CGUCCugCGgCAGAaCCAGUU--------------UCU-CG- -5'
10765 3' -52.1 NC_002794.1 + 184689 0.69 0.95364
Target:  5'- cCAGGACGCCGgCggagGGUCGuccgucggcucuuccGAGCg -3'
miRNA:   3'- cGUCCUGCGGCaGaa--CCAGUuu-------------CUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.