miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10765 3' -52.1 NC_002794.1 + 4873 0.69 0.95751
Target:  5'- cGUAGGugGUgGUCUcGGUCAAguucuccuucuucuGGAcGCu -3'
miRNA:   3'- -CGUCCugCGgCAGAaCCAGUU--------------UCU-CG- -5'
10765 3' -52.1 NC_002794.1 + 10232 0.68 0.979234
Target:  5'- aGCAGGugacccCGCCGUCUcGuGUCcguucGAGCu -3'
miRNA:   3'- -CGUCCu-----GCGGCAGAaC-CAGuuu--CUCG- -5'
10765 3' -52.1 NC_002794.1 + 12105 0.66 0.993155
Target:  5'- aCGGGACGCCGU---GG-CA--GAGCa -3'
miRNA:   3'- cGUCCUGCGGCAgaaCCaGUuuCUCG- -5'
10765 3' -52.1 NC_002794.1 + 35654 0.67 0.983385
Target:  5'- --cGGGCGCCcgGUCUccgacgUGGUCAAcGAGg -3'
miRNA:   3'- cguCCUGCGG--CAGA------ACCAGUUuCUCg -5'
10765 3' -52.1 NC_002794.1 + 44580 0.76 0.697585
Target:  5'- cGCGGGAccgagccacCGCCGccuUCUUGGgcgcCGAGGGGCa -3'
miRNA:   3'- -CGUCCU---------GCGGC---AGAACCa---GUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 50382 0.67 0.985895
Target:  5'- gGCAGGAcCGagucguaaaacaaccCCGUCUUGGcaCAGAccGAGCc -3'
miRNA:   3'- -CGUCCU-GC---------------GGCAGAACCa-GUUU--CUCG- -5'
10765 3' -52.1 NC_002794.1 + 53672 0.7 0.946528
Target:  5'- cCAGGACGgauCCGUCc--GUCAAacGGAGCg -3'
miRNA:   3'- cGUCCUGC---GGCAGaacCAGUU--UCUCG- -5'
10765 3' -52.1 NC_002794.1 + 55816 0.71 0.903781
Target:  5'- gGCGcGGGCGCgCG-CUgaUGG-CGAAGAGCa -3'
miRNA:   3'- -CGU-CCUGCG-GCaGA--ACCaGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 61913 0.69 0.965558
Target:  5'- cGCAGcGACGUCGUCacccUCGAGGAGa -3'
miRNA:   3'- -CGUC-CUGCGGCAGaaccAGUUUCUCg -5'
10765 3' -52.1 NC_002794.1 + 69906 0.66 0.993155
Target:  5'- cGUAGG-UGCCGagUUcGUCGAAGaAGCg -3'
miRNA:   3'- -CGUCCuGCGGCagAAcCAGUUUC-UCG- -5'
10765 3' -52.1 NC_002794.1 + 70265 0.67 0.985209
Target:  5'- aGCGacGGAgGCCG-CgaaGGcCGGAGAGCa -3'
miRNA:   3'- -CGU--CCUgCGGCaGaa-CCaGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 74124 0.73 0.81237
Target:  5'- aGCAGGccgccgcCGCCGUCUcccUGGUCGAc-AGCa -3'
miRNA:   3'- -CGUCCu------GCGGCAGA---ACCAGUUucUCG- -5'
10765 3' -52.1 NC_002794.1 + 74766 0.66 0.993885
Target:  5'- aCAGcGCGCuCGUCgaguacgacgaGGUCAAAGGGUu -3'
miRNA:   3'- cGUCcUGCG-GCAGaa---------CCAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 76952 0.68 0.971629
Target:  5'- cGCGGaGACGCCGUCcggccGGccCGccGAGCu -3'
miRNA:   3'- -CGUC-CUGCGGCAGaa---CCa-GUuuCUCG- -5'
10765 3' -52.1 NC_002794.1 + 91055 0.71 0.913563
Target:  5'- aCGGGGCGCgCGUCgucauguacgccgUGGugggcuacgggcUCAAGGAGCu -3'
miRNA:   3'- cGUCCUGCG-GCAGa------------ACC------------AGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 94023 0.67 0.981396
Target:  5'- gGCGGGuucCGCCGgcg-GGcCcGAGAGCg -3'
miRNA:   3'- -CGUCCu--GCGGCagaaCCaGuUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 101063 1.14 0.004424
Target:  5'- uGCAGGACGCCGUCUUGGUCAAAGAGCu -3'
miRNA:   3'- -CGUCCUGCGGCAGAACCAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 105472 0.7 0.942027
Target:  5'- -uGGGACgacgaGCCGUCgucuccGGUCGuGGAGCc -3'
miRNA:   3'- cgUCCUG-----CGGCAGaa----CCAGUuUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 106363 0.66 0.992764
Target:  5'- gGCGGG-CGCCGguucgcgCGGAGGGCa -3'
miRNA:   3'- -CGUCCuGCGGCagaaccaGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 110278 0.66 0.993155
Target:  5'- gGC-GGcCGCCGUCcucgGGcCcGAGAGCc -3'
miRNA:   3'- -CGuCCuGCGGCAGaa--CCaGuUUCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.