miRNA display CGI


Results 21 - 40 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10765 3' -52.1 NC_002794.1 + 111761 0.69 0.950793
Target:  5'- cGCGcGGCGCCGUCggGGcgggcucguUCGucAGGAGCg -3'
miRNA:   3'- -CGUcCUGCGGCAGaaCC---------AGU--UUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 112346 0.68 0.974358
Target:  5'- cCGGcGGCGCCGgcggCggGG-CGGGGAGCu -3'
miRNA:   3'- cGUC-CUGCGGCa---GaaCCaGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 112390 0.68 0.971629
Target:  5'- cGCAGGGCGgCGaUCUUGGcgCGcuGcAGCc -3'
miRNA:   3'- -CGUCCUGCgGC-AGAACCa-GUuuC-UCG- -5'
10765 3' -52.1 NC_002794.1 + 113379 0.67 0.981396
Target:  5'- uGCGGGcCGCCGUCgugcaGGcgcugCAGcacccGGAGCu -3'
miRNA:   3'- -CGUCCuGCGGCAGaa---CCa----GUU-----UCUCG- -5'
10765 3' -52.1 NC_002794.1 + 114237 0.66 0.991021
Target:  5'- uCAGcGCGUCGaggUGGUgAAAGAGCg -3'
miRNA:   3'- cGUCcUGCGGCagaACCAgUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 115613 0.66 0.994786
Target:  5'- cGCccGGCGCCGggaggcgGGUCAGgugguucAGGGCg -3'
miRNA:   3'- -CGucCUGCGGCagaa---CCAGUU-------UCUCG- -5'
10765 3' -52.1 NC_002794.1 + 115697 0.66 0.989774
Target:  5'- aGgAGGAC-CCGUC--GGUCGcguacAGGAGCc -3'
miRNA:   3'- -CgUCCUGcGGCAGaaCCAGU-----UUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 116052 0.68 0.979234
Target:  5'- cGCAGGGgggaGCgCGaCUggGGUCGcGGAGCg -3'
miRNA:   3'- -CGUCCUg---CG-GCaGAa-CCAGUuUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 116437 0.75 0.717707
Target:  5'- uCAGGACGCCGaCggUGGcgaugaCGAAGAGCg -3'
miRNA:   3'- cGUCCUGCGGCaGa-ACCa-----GUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 117630 0.71 0.903781
Target:  5'- aCAGGGCGCCGaccgCgcggccccGGaCGAAGAGCg -3'
miRNA:   3'- cGUCCUGCGGCa---Gaa------CCaGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 117814 0.67 0.986877
Target:  5'- aGCAGcGACuGCuuCGUCa-GGUCGcAGAGCa -3'
miRNA:   3'- -CGUC-CUG-CG--GCAGaaCCAGUuUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 118242 0.67 0.986877
Target:  5'- -gAGGAUGUCGgcgggCUggaGGUCGGccGGGGCg -3'
miRNA:   3'- cgUCCUGCGGCa----GAa--CCAGUU--UCUCG- -5'
10765 3' -52.1 NC_002794.1 + 118953 0.71 0.890702
Target:  5'- uGCAGGAagaGCCG-CgugacGGUCAGguggcGGAGCa -3'
miRNA:   3'- -CGUCCUg--CGGCaGaa---CCAGUU-----UCUCG- -5'
10765 3' -52.1 NC_002794.1 + 123795 0.74 0.766548
Target:  5'- gGCGGuGGCGCCGUUcgGGggcgCGGAcGAGCa -3'
miRNA:   3'- -CGUC-CUGCGGCAGaaCCa---GUUU-CUCG- -5'
10765 3' -52.1 NC_002794.1 + 124391 0.69 0.965558
Target:  5'- cGCGGcGGCG-CGUCgccGGUCGucGGGGCg -3'
miRNA:   3'- -CGUC-CUGCgGCAGaa-CCAGUu-UCUCG- -5'
10765 3' -52.1 NC_002794.1 + 128467 0.67 0.986877
Target:  5'- cCAGGACGaCCgGUCaccgGGUCGcggaccGGGGGCc -3'
miRNA:   3'- cGUCCUGC-GG-CAGaa--CCAGU------UUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 128545 0.7 0.937287
Target:  5'- uCGGGuGCGCCGUCcugcUGGUCAucGcGCu -3'
miRNA:   3'- cGUCC-UGCGGCAGa---ACCAGUuuCuCG- -5'
10765 3' -52.1 NC_002794.1 + 136516 0.71 0.897358
Target:  5'- aGCGGGGCGagGUagagaUGGUUGAAGAGCc -3'
miRNA:   3'- -CGUCCUGCggCAga---ACCAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 137348 0.67 0.986877
Target:  5'- gGCucGGCGUCGUCggGGUCuucuucGAGCc -3'
miRNA:   3'- -CGucCUGCGGCAGaaCCAGuuu---CUCG- -5'
10765 3' -52.1 NC_002794.1 + 137735 0.66 0.993155
Target:  5'- uCAGGcgauGgGCCGacgCUUGGaacggcggcUCGAAGAGCa -3'
miRNA:   3'- cGUCC----UgCGGCa--GAACC---------AGUUUCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.