Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10765 | 3' | -52.1 | NC_002794.1 | + | 138013 | 0.67 | 0.983385 |
Target: 5'- cGCAGGuACGCCaccaguuccgaGUCgUGGUCGcAGuAGUg -3' miRNA: 3'- -CGUCC-UGCGG-----------CAGaACCAGUuUC-UCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 138290 | 0.71 | 0.915913 |
Target: 5'- aGCGGGugGCgGcCUUGGcccgcacgcugUCGGGGAGg -3' miRNA: 3'- -CGUCCugCGgCaGAACC-----------AGUUUCUCg -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 140089 | 0.66 | 0.994058 |
Target: 5'- aGCAGGACGUCca--UGGUCGGc-GGCg -3' miRNA: 3'- -CGUCCUGCGGcagaACCAGUUucUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 140187 | 0.66 | 0.992145 |
Target: 5'- uCGGcGACGgCGUC---GUCGAGGGGCg -3' miRNA: 3'- cGUC-CUGCgGCAGaacCAGUUUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 141436 | 0.68 | 0.971629 |
Target: 5'- -gGGGGCGCCGg---GGgcgCcGGGAGCg -3' miRNA: 3'- cgUCCUGCGGCagaaCCa--GuUUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 142939 | 0.68 | 0.970772 |
Target: 5'- aGCAGGugGCCGaggggaagUCggcGGcgucgagcuccucgUCGAGGGGCu -3' miRNA: 3'- -CGUCCugCGGC--------AGaa-CC--------------AGUUUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 148136 | 0.66 | 0.993155 |
Target: 5'- cGCGGGGcCGCCGg---GG-CGAGG-GCg -3' miRNA: 3'- -CGUCCU-GCGGCagaaCCaGUUUCuCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 149754 | 0.75 | 0.72766 |
Target: 5'- gGCGGGAcCGCUGUCUcGGcCuguuGGAGCg -3' miRNA: 3'- -CGUCCU-GCGGCAGAaCCaGuu--UCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 152957 | 0.66 | 0.989774 |
Target: 5'- --cGGAcaCGCCGacgcCUUGGUCGGGGcGCu -3' miRNA: 3'- cguCCU--GCGGCa---GAACCAGUUUCuCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 156186 | 0.69 | 0.965558 |
Target: 5'- --cGGACGCgucaucggaGUCgccGGUCGGAGGGCc -3' miRNA: 3'- cguCCUGCGg--------CAGaa-CCAGUUUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 156431 | 0.71 | 0.903149 |
Target: 5'- gGCGGGugagagaccggucGCGCCGaaggCgguUGGUUAGGGGGCg -3' miRNA: 3'- -CGUCC-------------UGCGGCa---Ga--ACCAGUUUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 160307 | 0.74 | 0.794477 |
Target: 5'- uGguGGAUGuUCGUCUUGGggcuGGAGCg -3' miRNA: 3'- -CguCCUGC-GGCAGAACCaguuUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 160724 | 0.68 | 0.979234 |
Target: 5'- --cGGAUGCCGUgUUGGaUUGgugguugggcGAGAGCg -3' miRNA: 3'- cguCCUGCGGCAgAACC-AGU----------UUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 179581 | 0.68 | 0.97689 |
Target: 5'- --uGGAgGCCuUCUUGcgcaagaucacGUCGAGGAGCg -3' miRNA: 3'- cguCCUgCGGcAGAAC-----------CAGUUUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 180202 | 0.68 | 0.968698 |
Target: 5'- aGCAGGAUGUCGUCcaGGUuCAAgcuggaaagaacAGAcGCg -3' miRNA: 3'- -CGUCCUGCGGCAGaaCCA-GUU------------UCU-CG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 181544 | 0.67 | 0.988395 |
Target: 5'- gGCGGGcCGgCGcUCUcGGUCGccGGGCc -3' miRNA: 3'- -CGUCCuGCgGC-AGAaCCAGUuuCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 184689 | 0.69 | 0.95364 |
Target: 5'- cCAGGACGCCGgCggagGGUCGuccgucggcucuuccGAGCg -3' miRNA: 3'- cGUCCUGCGGCaGaa--CCAGUuu-------------CUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 189301 | 0.69 | 0.950377 |
Target: 5'- aGgAGGugGUCGUgcaguucgggcagC-UGGUCGGGGGGCa -3' miRNA: 3'- -CgUCCugCGGCA-------------GaACCAGUUUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 192199 | 0.66 | 0.994862 |
Target: 5'- aGCAacGGACGaCGUC----UCGAAGAGCg -3' miRNA: 3'- -CGU--CCUGCgGCAGaaccAGUUUCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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