miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10765 3' -52.1 NC_002794.1 + 192199 0.66 0.994862
Target:  5'- aGCAacGGACGaCGUC----UCGAAGAGCg -3'
miRNA:   3'- -CGU--CCUGCgGCAGaaccAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 189301 0.69 0.950377
Target:  5'- aGgAGGugGUCGUgcaguucgggcagC-UGGUCGGGGGGCa -3'
miRNA:   3'- -CgUCCugCGGCA-------------GaACCAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 184689 0.69 0.95364
Target:  5'- cCAGGACGCCGgCggagGGUCGuccgucggcucuuccGAGCg -3'
miRNA:   3'- cGUCCUGCGGCaGaa--CCAGUuu-------------CUCG- -5'
10765 3' -52.1 NC_002794.1 + 181544 0.67 0.988395
Target:  5'- gGCGGGcCGgCGcUCUcGGUCGccGGGCc -3'
miRNA:   3'- -CGUCCuGCgGC-AGAaCCAGUuuCUCG- -5'
10765 3' -52.1 NC_002794.1 + 180202 0.68 0.968698
Target:  5'- aGCAGGAUGUCGUCcaGGUuCAAgcuggaaagaacAGAcGCg -3'
miRNA:   3'- -CGUCCUGCGGCAGaaCCA-GUU------------UCU-CG- -5'
10765 3' -52.1 NC_002794.1 + 179581 0.68 0.97689
Target:  5'- --uGGAgGCCuUCUUGcgcaagaucacGUCGAGGAGCg -3'
miRNA:   3'- cguCCUgCGGcAGAAC-----------CAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 160724 0.68 0.979234
Target:  5'- --cGGAUGCCGUgUUGGaUUGgugguugggcGAGAGCg -3'
miRNA:   3'- cguCCUGCGGCAgAACC-AGU----------UUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 160307 0.74 0.794477
Target:  5'- uGguGGAUGuUCGUCUUGGggcuGGAGCg -3'
miRNA:   3'- -CguCCUGC-GGCAGAACCaguuUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 156431 0.71 0.903149
Target:  5'- gGCGGGugagagaccggucGCGCCGaaggCgguUGGUUAGGGGGCg -3'
miRNA:   3'- -CGUCC-------------UGCGGCa---Ga--ACCAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 156186 0.69 0.965558
Target:  5'- --cGGACGCgucaucggaGUCgccGGUCGGAGGGCc -3'
miRNA:   3'- cguCCUGCGg--------CAGaa-CCAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 152957 0.66 0.989774
Target:  5'- --cGGAcaCGCCGacgcCUUGGUCGGGGcGCu -3'
miRNA:   3'- cguCCU--GCGGCa---GAACCAGUUUCuCG- -5'
10765 3' -52.1 NC_002794.1 + 149754 0.75 0.72766
Target:  5'- gGCGGGAcCGCUGUCUcGGcCuguuGGAGCg -3'
miRNA:   3'- -CGUCCU-GCGGCAGAaCCaGuu--UCUCG- -5'
10765 3' -52.1 NC_002794.1 + 148136 0.66 0.993155
Target:  5'- cGCGGGGcCGCCGg---GG-CGAGG-GCg -3'
miRNA:   3'- -CGUCCU-GCGGCagaaCCaGUUUCuCG- -5'
10765 3' -52.1 NC_002794.1 + 142939 0.68 0.970772
Target:  5'- aGCAGGugGCCGaggggaagUCggcGGcgucgagcuccucgUCGAGGGGCu -3'
miRNA:   3'- -CGUCCugCGGC--------AGaa-CC--------------AGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 141436 0.68 0.971629
Target:  5'- -gGGGGCGCCGg---GGgcgCcGGGAGCg -3'
miRNA:   3'- cgUCCUGCGGCagaaCCa--GuUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 140187 0.66 0.992145
Target:  5'- uCGGcGACGgCGUC---GUCGAGGGGCg -3'
miRNA:   3'- cGUC-CUGCgGCAGaacCAGUUUCUCG- -5'
10765 3' -52.1 NC_002794.1 + 140089 0.66 0.994058
Target:  5'- aGCAGGACGUCca--UGGUCGGc-GGCg -3'
miRNA:   3'- -CGUCCUGCGGcagaACCAGUUucUCG- -5'
10765 3' -52.1 NC_002794.1 + 138290 0.71 0.915913
Target:  5'- aGCGGGugGCgGcCUUGGcccgcacgcugUCGGGGAGg -3'
miRNA:   3'- -CGUCCugCGgCaGAACC-----------AGUUUCUCg -5'
10765 3' -52.1 NC_002794.1 + 138013 0.67 0.983385
Target:  5'- cGCAGGuACGCCaccaguuccgaGUCgUGGUCGcAGuAGUg -3'
miRNA:   3'- -CGUCC-UGCGG-----------CAGaACCAGUuUC-UCG- -5'
10765 3' -52.1 NC_002794.1 + 137735 0.66 0.993155
Target:  5'- uCAGGcgauGgGCCGacgCUUGGaacggcggcUCGAAGAGCa -3'
miRNA:   3'- cGUCC----UgCGGCa--GAACC---------AGUUUCUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.