Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10765 | 3' | -52.1 | NC_002794.1 | + | 137348 | 0.67 | 0.986877 |
Target: 5'- gGCucGGCGUCGUCggGGUCuucuucGAGCc -3' miRNA: 3'- -CGucCUGCGGCAGaaCCAGuuu---CUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 136516 | 0.71 | 0.897358 |
Target: 5'- aGCGGGGCGagGUagagaUGGUUGAAGAGCc -3' miRNA: 3'- -CGUCCUGCggCAga---ACCAGUUUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 128545 | 0.7 | 0.937287 |
Target: 5'- uCGGGuGCGCCGUCcugcUGGUCAucGcGCu -3' miRNA: 3'- cGUCC-UGCGGCAGa---ACCAGUuuCuCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 128467 | 0.67 | 0.986877 |
Target: 5'- cCAGGACGaCCgGUCaccgGGUCGcggaccGGGGGCc -3' miRNA: 3'- cGUCCUGC-GG-CAGaa--CCAGU------UUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 124391 | 0.69 | 0.965558 |
Target: 5'- cGCGGcGGCG-CGUCgccGGUCGucGGGGCg -3' miRNA: 3'- -CGUC-CUGCgGCAGaa-CCAGUu-UCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 123795 | 0.74 | 0.766548 |
Target: 5'- gGCGGuGGCGCCGUUcgGGggcgCGGAcGAGCa -3' miRNA: 3'- -CGUC-CUGCGGCAGaaCCa---GUUU-CUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 118953 | 0.71 | 0.890702 |
Target: 5'- uGCAGGAagaGCCG-CgugacGGUCAGguggcGGAGCa -3' miRNA: 3'- -CGUCCUg--CGGCaGaa---CCAGUU-----UCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 118242 | 0.67 | 0.986877 |
Target: 5'- -gAGGAUGUCGgcgggCUggaGGUCGGccGGGGCg -3' miRNA: 3'- cgUCCUGCGGCa----GAa--CCAGUU--UCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 117814 | 0.67 | 0.986877 |
Target: 5'- aGCAGcGACuGCuuCGUCa-GGUCGcAGAGCa -3' miRNA: 3'- -CGUC-CUG-CG--GCAGaaCCAGUuUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 117630 | 0.71 | 0.903781 |
Target: 5'- aCAGGGCGCCGaccgCgcggccccGGaCGAAGAGCg -3' miRNA: 3'- cGUCCUGCGGCa---Gaa------CCaGUUUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 116437 | 0.75 | 0.717707 |
Target: 5'- uCAGGACGCCGaCggUGGcgaugaCGAAGAGCg -3' miRNA: 3'- cGUCCUGCGGCaGa-ACCa-----GUUUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 116052 | 0.68 | 0.979234 |
Target: 5'- cGCAGGGgggaGCgCGaCUggGGUCGcGGAGCg -3' miRNA: 3'- -CGUCCUg---CG-GCaGAa-CCAGUuUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 115697 | 0.66 | 0.989774 |
Target: 5'- aGgAGGAC-CCGUC--GGUCGcguacAGGAGCc -3' miRNA: 3'- -CgUCCUGcGGCAGaaCCAGU-----UUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 115613 | 0.66 | 0.994786 |
Target: 5'- cGCccGGCGCCGggaggcgGGUCAGgugguucAGGGCg -3' miRNA: 3'- -CGucCUGCGGCagaa---CCAGUU-------UCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 114237 | 0.66 | 0.991021 |
Target: 5'- uCAGcGCGUCGaggUGGUgAAAGAGCg -3' miRNA: 3'- cGUCcUGCGGCagaACCAgUUUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 113379 | 0.67 | 0.981396 |
Target: 5'- uGCGGGcCGCCGUCgugcaGGcgcugCAGcacccGGAGCu -3' miRNA: 3'- -CGUCCuGCGGCAGaa---CCa----GUU-----UCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 112390 | 0.68 | 0.971629 |
Target: 5'- cGCAGGGCGgCGaUCUUGGcgCGcuGcAGCc -3' miRNA: 3'- -CGUCCUGCgGC-AGAACCa-GUuuC-UCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 112346 | 0.68 | 0.974358 |
Target: 5'- cCGGcGGCGCCGgcggCggGG-CGGGGAGCu -3' miRNA: 3'- cGUC-CUGCGGCa---GaaCCaGUUUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 111761 | 0.69 | 0.950793 |
Target: 5'- cGCGcGGCGCCGUCggGGcgggcucguUCGucAGGAGCg -3' miRNA: 3'- -CGUcCUGCGGCAGaaCC---------AGU--UUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 110278 | 0.66 | 0.993155 |
Target: 5'- gGC-GGcCGCCGUCcucgGGcCcGAGAGCc -3' miRNA: 3'- -CGuCCuGCGGCAGaa--CCaGuUUCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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