Results 41 - 59 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10765 | 3' | -52.1 | NC_002794.1 | + | 69906 | 0.66 | 0.993155 |
Target: 5'- cGUAGG-UGCCGagUUcGUCGAAGaAGCg -3' miRNA: 3'- -CGUCCuGCGGCagAAcCAGUUUC-UCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 140089 | 0.66 | 0.994058 |
Target: 5'- aGCAGGACGUCca--UGGUCGGc-GGCg -3' miRNA: 3'- -CGUCCUGCGGcagaACCAGUUucUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 115613 | 0.66 | 0.994786 |
Target: 5'- cGCccGGCGCCGggaggcgGGUCAGgugguucAGGGCg -3' miRNA: 3'- -CGucCUGCGGCagaa---CCAGUU-------UCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 115697 | 0.66 | 0.989774 |
Target: 5'- aGgAGGAC-CCGUC--GGUCGcguacAGGAGCc -3' miRNA: 3'- -CgUCCUGcGGCAGaaCCAGU-----UUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 128467 | 0.67 | 0.986877 |
Target: 5'- cCAGGACGaCCgGUCaccgGGUCGcggaccGGGGGCc -3' miRNA: 3'- cGUCCUGC-GG-CAGaa--CCAGU------UUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 181544 | 0.67 | 0.988395 |
Target: 5'- gGCGGGcCGgCGcUCUcGGUCGccGGGCc -3' miRNA: 3'- -CGUCCuGCgGC-AGAaCCAGUuuCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 179581 | 0.68 | 0.97689 |
Target: 5'- --uGGAgGCCuUCUUGcgcaagaucacGUCGAGGAGCg -3' miRNA: 3'- cguCCUgCGGcAGAAC-----------CAGUUUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 160724 | 0.68 | 0.979234 |
Target: 5'- --cGGAUGCCGUgUUGGaUUGgugguugggcGAGAGCg -3' miRNA: 3'- cguCCUGCGGCAgAACC-AGU----------UUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 116052 | 0.68 | 0.979234 |
Target: 5'- cGCAGGGgggaGCgCGaCUggGGUCGcGGAGCg -3' miRNA: 3'- -CGUCCUg---CG-GCaGAa-CCAGUuUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 113379 | 0.67 | 0.981396 |
Target: 5'- uGCGGGcCGCCGUCgugcaGGcgcugCAGcacccGGAGCu -3' miRNA: 3'- -CGUCCuGCGGCAGaa---CCa----GUU-----UCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 35654 | 0.67 | 0.983385 |
Target: 5'- --cGGGCGCCcgGUCUccgacgUGGUCAAcGAGg -3' miRNA: 3'- cguCCUGCGG--CAGA------ACCAGUUuCUCg -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 94023 | 0.67 | 0.981396 |
Target: 5'- gGCGGGuucCGCCGgcg-GGcCcGAGAGCg -3' miRNA: 3'- -CGUCCu--GCGGCagaaCCaGuUUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 138013 | 0.67 | 0.983385 |
Target: 5'- cGCAGGuACGCCaccaguuccgaGUCgUGGUCGcAGuAGUg -3' miRNA: 3'- -CGUCC-UGCGG-----------CAGaACCAGUuUC-UCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 70265 | 0.67 | 0.985209 |
Target: 5'- aGCGacGGAgGCCG-CgaaGGcCGGAGAGCa -3' miRNA: 3'- -CGU--CCUgCGGCaGaa-CCaGUUUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 137348 | 0.67 | 0.986877 |
Target: 5'- gGCucGGCGUCGUCggGGUCuucuucGAGCc -3' miRNA: 3'- -CGucCUGCGGCAGaaCCAGuuu---CUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 50382 | 0.67 | 0.985895 |
Target: 5'- gGCAGGAcCGagucguaaaacaaccCCGUCUUGGcaCAGAccGAGCc -3' miRNA: 3'- -CGUCCU-GC---------------GGCAGAACCa-GUUU--CUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 118242 | 0.67 | 0.986877 |
Target: 5'- -gAGGAUGUCGgcgggCUggaGGUCGGccGGGGCg -3' miRNA: 3'- cgUCCUGCGGCa----GAa--CCAGUU--UCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 117814 | 0.67 | 0.986877 |
Target: 5'- aGCAGcGACuGCuuCGUCa-GGUCGcAGAGCa -3' miRNA: 3'- -CGUC-CUG-CG--GCAGaaCCAGUuUCUCG- -5' |
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10765 | 3' | -52.1 | NC_002794.1 | + | 192199 | 0.66 | 0.994862 |
Target: 5'- aGCAacGGACGaCGUC----UCGAAGAGCg -3' miRNA: 3'- -CGU--CCUGCgGCAGaaccAGUUUCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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