miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10765 5' -51.5 NC_002794.1 + 181567 0.66 0.994633
Target:  5'- cGGGCcaaUCAGgaucgACagGCUGCG-GGCCGCg -3'
miRNA:   3'- -UUCG---AGUUaa---UGg-UGAUGCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 135713 0.66 0.994633
Target:  5'- -cGCUCGA--GCUGCUGCGuAGcaucugcaccuGCCGCg -3'
miRNA:   3'- uuCGAGUUaaUGGUGAUGC-UC-----------CGGCG- -5'
10765 5' -51.5 NC_002794.1 + 123459 0.66 0.994633
Target:  5'- uGGC-CGAgcACCuguACUACGAGGCgcUGCg -3'
miRNA:   3'- uUCGaGUUaaUGG---UGAUGCUCCG--GCG- -5'
10765 5' -51.5 NC_002794.1 + 57151 0.66 0.994633
Target:  5'- -uGCUCAc--GCUGCUGCGcaaGGcGCCGCc -3'
miRNA:   3'- uuCGAGUuaaUGGUGAUGC---UC-CGGCG- -5'
10765 5' -51.5 NC_002794.1 + 71726 0.66 0.994633
Target:  5'- cGGgUCGuugGCCGCcACGccgaAGGCCGCc -3'
miRNA:   3'- uUCgAGUuaaUGGUGaUGC----UCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 46249 0.66 0.994633
Target:  5'- cGGCUCGu---CCGCUuccuCG-GGCCGUc -3'
miRNA:   3'- uUCGAGUuaauGGUGAu---GCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 11708 0.66 0.994633
Target:  5'- gAGGCUCGGUcgGCCACUugcaGCuGuGGCaGCa -3'
miRNA:   3'- -UUCGAGUUAa-UGGUGA----UG-CuCCGgCG- -5'
10765 5' -51.5 NC_002794.1 + 112741 0.66 0.994633
Target:  5'- aAGGCgCGGUgcuCCGCggcgGCGGGGUCGg -3'
miRNA:   3'- -UUCGaGUUAau-GGUGa---UGCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 177132 0.66 0.994633
Target:  5'- gGAGUUCcuGUUGCCcCUGauucGGCCGCa -3'
miRNA:   3'- -UUCGAGu-UAAUGGuGAUgcu-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 139019 0.66 0.994633
Target:  5'- aGAGCUC----GCCGCgGCGAaacuGGCCGa -3'
miRNA:   3'- -UUCGAGuuaaUGGUGaUGCU----CCGGCg -5'
10765 5' -51.5 NC_002794.1 + 14950 0.66 0.994633
Target:  5'- cGGCUCGcccGCCGCcuCGAaGCCGCg -3'
miRNA:   3'- uUCGAGUuaaUGGUGauGCUcCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 181850 0.66 0.993782
Target:  5'- cGAGCUCGcacuccAUgaucacgcuCCGCUGCcccGGGGUCGCg -3'
miRNA:   3'- -UUCGAGU------UAau-------GGUGAUG---CUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 59290 0.66 0.993782
Target:  5'- -cGCUC----GCCGCU-CGAcGCCGCg -3'
miRNA:   3'- uuCGAGuuaaUGGUGAuGCUcCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 11630 0.66 0.993782
Target:  5'- uAGGCUCGAc--CCACaGCGAcgGGCgGCc -3'
miRNA:   3'- -UUCGAGUUaauGGUGaUGCU--CCGgCG- -5'
10765 5' -51.5 NC_002794.1 + 177610 0.66 0.993782
Target:  5'- cGGgUCGGUcgAUCGCUccucgacgACGAGGCCGa -3'
miRNA:   3'- uUCgAGUUAa-UGGUGA--------UGCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 58001 0.66 0.993782
Target:  5'- cAGGCcuUCGuc-GCCGC--CGGGGCCGCc -3'
miRNA:   3'- -UUCG--AGUuaaUGGUGauGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 91029 0.66 0.992824
Target:  5'- cGAGCUCugggcgGCC-CUcgggguggACGGGGCgCGCg -3'
miRNA:   3'- -UUCGAGuuaa--UGGuGA--------UGCUCCG-GCG- -5'
10765 5' -51.5 NC_002794.1 + 73729 0.66 0.992824
Target:  5'- -cGCUCA---ACUACUACGA--CCGCg -3'
miRNA:   3'- uuCGAGUuaaUGGUGAUGCUccGGCG- -5'
10765 5' -51.5 NC_002794.1 + 86877 0.66 0.992824
Target:  5'- cGGCUaggCAGUagGCC-CgaucccgGCGGGGCCGCc -3'
miRNA:   3'- uUCGA---GUUAa-UGGuGa------UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 103796 0.66 0.992824
Target:  5'- uGAGCUUGAggUGCgC-CUGCGAcGGCgGCg -3'
miRNA:   3'- -UUCGAGUUa-AUG-GuGAUGCU-CCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.