Results 21 - 40 of 98 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10765 | 5' | -51.5 | NC_002794.1 | + | 180004 | 0.7 | 0.942248 |
Target: 5'- cGGCgggcccgGCCACgACGAcGGCCGCg -3' miRNA: 3'- uUCGaguuaa-UGGUGaUGCU-CCGGCG- -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 94989 | 0.7 | 0.922544 |
Target: 5'- gGAGCUCuGUcGCCGCUugcugucgcugAUGGGGCgGCu -3' miRNA: 3'- -UUCGAGuUAaUGGUGA-----------UGCUCCGgCG- -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 106237 | 0.7 | 0.922544 |
Target: 5'- -cGCUCGGgucgcagaccGCCGCgaaccgGCGAGcGCCGCg -3' miRNA: 3'- uuCGAGUUaa--------UGGUGa-----UGCUC-CGGCG- -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 80412 | 0.7 | 0.938401 |
Target: 5'- cGGCcCAggUGgCGCcggGCGGGGCCGCc -3' miRNA: 3'- uUCGaGUuaAUgGUGa--UGCUCCGGCG- -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 39525 | 0.7 | 0.943185 |
Target: 5'- cAGUUCGGcUACCACc-UGGGGCUGCu -3' miRNA: 3'- uUCGAGUUaAUGGUGauGCUCCGGCG- -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 145854 | 0.7 | 0.943185 |
Target: 5'- -cGCUCGAcgaGCCGC--CGAGGgCCGCg -3' miRNA: 3'- uuCGAGUUaa-UGGUGauGCUCC-GGCG- -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 14763 | 0.7 | 0.92754 |
Target: 5'- gAAGCcgUCGAg-GCCGCUgaggccgGCGAGGCCGg -3' miRNA: 3'- -UUCG--AGUUaaUGGUGA-------UGCUCCGGCg -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 49004 | 0.7 | 0.928082 |
Target: 5'- gAAGCUCuc---CCGCgccGCGGcGGCCGCg -3' miRNA: 3'- -UUCGAGuuaauGGUGa--UGCU-CCGGCG- -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 52751 | 0.7 | 0.928082 |
Target: 5'- -cGUUCGuagUACCGCgccGCGgcccGGGCCGCg -3' miRNA: 3'- uuCGAGUua-AUGGUGa--UGC----UCCGGCG- -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 184581 | 0.69 | 0.956053 |
Target: 5'- cGGCggCGGcgGCCAC-GCGcGGCCGCg -3' miRNA: 3'- uUCGa-GUUaaUGGUGaUGCuCCGGCG- -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 1 | 0.69 | 0.947719 |
Target: 5'- cGAGCgcCGAgacgcgGCCGCgaacacgaaaACGAGGCCGCc -3' miRNA: 3'- -UUCGa-GUUaa----UGGUGa---------UGCUCCGGCG- -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 44248 | 0.69 | 0.963434 |
Target: 5'- cGGCUCGG-UGCCGg-GCGGcucGGCCGCc -3' miRNA: 3'- uUCGAGUUaAUGGUgaUGCU---CCGGCG- -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 10976 | 0.69 | 0.963434 |
Target: 5'- -cGUcCGAUgcCUGCUcCGAGGCCGCa -3' miRNA: 3'- uuCGaGUUAauGGUGAuGCUCCGGCG- -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 179565 | 0.69 | 0.947719 |
Target: 5'- -uGCUCGAagACCgAUUugGAGGCCu- -3' miRNA: 3'- uuCGAGUUaaUGG-UGAugCUCCGGcg -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 179973 | 0.69 | 0.947719 |
Target: 5'- gGAGCggCAGgaGCCAagGCGGuGGCCGCg -3' miRNA: 3'- -UUCGa-GUUaaUGGUgaUGCU-CCGGCG- -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 189118 | 0.69 | 0.952007 |
Target: 5'- cGGGC-CAGgugguCCAagUGCGGGGCCGCc -3' miRNA: 3'- -UUCGaGUUaau--GGUg-AUGCUCCGGCG- -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 23962 | 0.69 | 0.952007 |
Target: 5'- uGGCUCcga-GCCAgcgGCGAGGCCGg -3' miRNA: 3'- uUCGAGuuaaUGGUga-UGCUCCGGCg -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 147138 | 0.68 | 0.96678 |
Target: 5'- cGGUUCGAgacgGCCc---CGGGGCCGCg -3' miRNA: 3'- uUCGAGUUaa--UGGugauGCUCCGGCG- -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 85389 | 0.68 | 0.978007 |
Target: 5'- -uGCUCAcg-GCCA----GAGGCCGCg -3' miRNA: 3'- uuCGAGUuaaUGGUgaugCUCCGGCG- -5' |
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10765 | 5' | -51.5 | NC_002794.1 | + | 148108 | 0.68 | 0.973915 |
Target: 5'- -cGCUCAAgaaGCgACggucggugucgggcGCGGGGCCGCc -3' miRNA: 3'- uuCGAGUUaa-UGgUGa-------------UGCUCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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