miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10765 5' -51.5 NC_002794.1 + 101097 1.09 0.008616
Target:  5'- aAAGCUCAAUUACCACUACGAGGCCGCc -3'
miRNA:   3'- -UUCGAGUUAAUGGUGAUGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 90455 0.77 0.639002
Target:  5'- cGAGCUUuucggcgagGCCGCgcgcgGCGGGGCCGCc -3'
miRNA:   3'- -UUCGAGuuaa-----UGGUGa----UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 48892 0.76 0.683004
Target:  5'- cAGGC-CAgcGUUGCCGCagcuCGGGGCCGCu -3'
miRNA:   3'- -UUCGaGU--UAAUGGUGau--GCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 102746 0.75 0.703726
Target:  5'- cGAGCUggcCGAggACCcggACUACGuGGCCGCg -3'
miRNA:   3'- -UUCGA---GUUaaUGG---UGAUGCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 191810 0.74 0.754239
Target:  5'- -cGCUCG---GCCGCU-CGAGGaCCGCg -3'
miRNA:   3'- uuCGAGUuaaUGGUGAuGCUCC-GGCG- -5'
10765 5' -51.5 NC_002794.1 + 126359 0.74 0.76404
Target:  5'- cGGCUcCGAUUucGCCGCUGCGuGGgCGCc -3'
miRNA:   3'- uUCGA-GUUAA--UGGUGAUGCuCCgGCG- -5'
10765 5' -51.5 NC_002794.1 + 85940 0.74 0.773718
Target:  5'- cGGGCUCGGaaccgacCCGgaACGGGGCCGCg -3'
miRNA:   3'- -UUCGAGUUaau----GGUgaUGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 149686 0.74 0.773718
Target:  5'- -cGCUCGAcugGCCGCg--GGGGCCGCc -3'
miRNA:   3'- uuCGAGUUaa-UGGUGaugCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 187471 0.74 0.773718
Target:  5'- -cGCUCGGcgcgcgccggGCCGaggACGAGGCCGCg -3'
miRNA:   3'- uuCGAGUUaa--------UGGUga-UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 62281 0.73 0.819912
Target:  5'- gGAGCUCGGccugcUGCCGCUcCGAGcCCGCg -3'
miRNA:   3'- -UUCGAGUUa----AUGGUGAuGCUCcGGCG- -5'
10765 5' -51.5 NC_002794.1 + 110180 0.73 0.845541
Target:  5'- gAGGCUCGAgauggGCCGCUGuucgaacaaGGGGUCGCu -3'
miRNA:   3'- -UUCGAGUUaa---UGGUGAUg--------CUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 78146 0.72 0.861617
Target:  5'- -cGCUCGAgacGCCGCU-CGAG-CCGCg -3'
miRNA:   3'- uuCGAGUUaa-UGGUGAuGCUCcGGCG- -5'
10765 5' -51.5 NC_002794.1 + 18181 0.71 0.8911
Target:  5'- -cGUUCAuccGCCACcgcgACGAGGCCGa -3'
miRNA:   3'- uuCGAGUuaaUGGUGa---UGCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 48537 0.71 0.897883
Target:  5'- cAGGCUCGGgucggccgACCACUcCGccGGCCGCc -3'
miRNA:   3'- -UUCGAGUUaa------UGGUGAuGCu-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 134147 0.71 0.897883
Target:  5'- gAAGCUCGGUccgUGuuGCUGgcCGuGGCCGCg -3'
miRNA:   3'- -UUCGAGUUA---AUggUGAU--GCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 150482 0.71 0.897883
Target:  5'- uGGCUCAcgUGCaC-CUGCGGcGCCGCc -3'
miRNA:   3'- uUCGAGUuaAUG-GuGAUGCUcCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 114349 0.71 0.910712
Target:  5'- cGGCUCGuccgccgccAggGCCgGCUGCaGGGCCGCg -3'
miRNA:   3'- uUCGAGU---------UaaUGG-UGAUGcUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 92422 0.71 0.910712
Target:  5'- cGAGCacgggCGAggACaCGCUggccguGCGGGGCCGCg -3'
miRNA:   3'- -UUCGa----GUUaaUG-GUGA------UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 27471 0.71 0.916754
Target:  5'- cGGCUCGAcucgucucgUCGCgcCGAGGCCGCg -3'
miRNA:   3'- uUCGAGUUaau------GGUGauGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 94989 0.7 0.922544
Target:  5'- gGAGCUCuGUcGCCGCUugcugucgcugAUGGGGCgGCu -3'
miRNA:   3'- -UUCGAGuUAaUGGUGA-----------UGCUCCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.