miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10765 5' -51.5 NC_002794.1 + 94989 0.7 0.922544
Target:  5'- gGAGCUCuGUcGCCGCUugcugucgcugAUGGGGCgGCu -3'
miRNA:   3'- -UUCGAGuUAaUGGUGA-----------UGCUCCGgCG- -5'
10765 5' -51.5 NC_002794.1 + 14763 0.7 0.92754
Target:  5'- gAAGCcgUCGAg-GCCGCUgaggccgGCGAGGCCGg -3'
miRNA:   3'- -UUCG--AGUUaaUGGUGA-------UGCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 52751 0.7 0.928082
Target:  5'- -cGUUCGuagUACCGCgccGCGgcccGGGCCGCg -3'
miRNA:   3'- uuCGAGUua-AUGGUGa--UGC----UCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 14601 0.7 0.928082
Target:  5'- cGAGCgcgcCGGgcACCGCgACGGGGCCGg -3'
miRNA:   3'- -UUCGa---GUUaaUGGUGaUGCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 49004 0.7 0.928082
Target:  5'- gAAGCUCuc---CCGCgccGCGGcGGCCGCg -3'
miRNA:   3'- -UUCGAGuuaauGGUGa--UGCU-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 80412 0.7 0.938401
Target:  5'- cGGCcCAggUGgCGCcggGCGGGGCCGCc -3'
miRNA:   3'- uUCGaGUuaAUgGUGa--UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 180004 0.7 0.942248
Target:  5'- cGGCgggcccgGCCACgACGAcGGCCGCg -3'
miRNA:   3'- uUCGaguuaa-UGGUGaUGCU-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 145854 0.7 0.943185
Target:  5'- -cGCUCGAcgaGCCGC--CGAGGgCCGCg -3'
miRNA:   3'- uuCGAGUUaa-UGGUGauGCUCC-GGCG- -5'
10765 5' -51.5 NC_002794.1 + 39525 0.7 0.943185
Target:  5'- cAGUUCGGcUACCACc-UGGGGCUGCu -3'
miRNA:   3'- uUCGAGUUaAUGGUGauGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 1 0.69 0.947719
Target:  5'- cGAGCgcCGAgacgcgGCCGCgaacacgaaaACGAGGCCGCc -3'
miRNA:   3'- -UUCGa-GUUaa----UGGUGa---------UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 179565 0.69 0.947719
Target:  5'- -uGCUCGAagACCgAUUugGAGGCCu- -3'
miRNA:   3'- uuCGAGUUaaUGG-UGAugCUCCGGcg -5'
10765 5' -51.5 NC_002794.1 + 179973 0.69 0.947719
Target:  5'- gGAGCggCAGgaGCCAagGCGGuGGCCGCg -3'
miRNA:   3'- -UUCGa-GUUaaUGGUgaUGCU-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 23962 0.69 0.952007
Target:  5'- uGGCUCcga-GCCAgcgGCGAGGCCGg -3'
miRNA:   3'- uUCGAGuuaaUGGUga-UGCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 189118 0.69 0.952007
Target:  5'- cGGGC-CAGgugguCCAagUGCGGGGCCGCc -3'
miRNA:   3'- -UUCGaGUUaau--GGUg-AUGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 184581 0.69 0.956053
Target:  5'- cGGCggCGGcgGCCAC-GCGcGGCCGCg -3'
miRNA:   3'- uUCGa-GUUaaUGGUGaUGCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 10976 0.69 0.963434
Target:  5'- -cGUcCGAUgcCUGCUcCGAGGCCGCa -3'
miRNA:   3'- uuCGaGUUAauGGUGAuGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 44248 0.69 0.963434
Target:  5'- cGGCUCGG-UGCCGg-GCGGcucGGCCGCc -3'
miRNA:   3'- uUCGAGUUaAUGGUgaUGCU---CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 147138 0.68 0.96678
Target:  5'- cGGUUCGAgacgGCCc---CGGGGCCGCg -3'
miRNA:   3'- uUCGAGUUaa--UGGugauGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 185367 0.68 0.969903
Target:  5'- cGGGC-CGAacGCCGCgaGCGAGGCCaGCc -3'
miRNA:   3'- -UUCGaGUUaaUGGUGa-UGCUCCGG-CG- -5'
10765 5' -51.5 NC_002794.1 + 22613 0.68 0.969903
Target:  5'- -cGCUCGAgccgaucggGCCGCU-CGAGG-CGCu -3'
miRNA:   3'- uuCGAGUUaa-------UGGUGAuGCUCCgGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.