miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10765 5' -51.5 NC_002794.1 + 73729 0.66 0.992824
Target:  5'- -cGCUCA---ACUACUACGA--CCGCg -3'
miRNA:   3'- uuCGAGUuaaUGGUGAUGCUccGGCG- -5'
10765 5' -51.5 NC_002794.1 + 91029 0.66 0.992824
Target:  5'- cGAGCUCugggcgGCC-CUcgggguggACGGGGCgCGCg -3'
miRNA:   3'- -UUCGAGuuaa--UGGuGA--------UGCUCCG-GCG- -5'
10765 5' -51.5 NC_002794.1 + 93663 0.66 0.992515
Target:  5'- gGGGCggCGAUUACCGCUacauGCGAcagcguuucguccuGGCCacGCg -3'
miRNA:   3'- -UUCGa-GUUAAUGGUGA----UGCU--------------CCGG--CG- -5'
10765 5' -51.5 NC_002794.1 + 130377 0.66 0.991753
Target:  5'- -cGcCUCA---ACCGCU--GAGGCCGCc -3'
miRNA:   3'- uuC-GAGUuaaUGGUGAugCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 184448 0.66 0.991753
Target:  5'- uGAGCgcgCcgcUGCCGCccGCG-GGCCGCg -3'
miRNA:   3'- -UUCGa--GuuaAUGGUGa-UGCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 114895 0.66 0.990559
Target:  5'- -uGCUCGGU--CCGCU-CGAGGagCGCg -3'
miRNA:   3'- uuCGAGUUAauGGUGAuGCUCCg-GCG- -5'
10765 5' -51.5 NC_002794.1 + 185460 0.66 0.990559
Target:  5'- -cGCgaCAAacGCCGCggGCGGcGGCCGCg -3'
miRNA:   3'- uuCGa-GUUaaUGGUGa-UGCU-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 61944 0.66 0.990559
Target:  5'- -cGCUCGcccccACCGCcccCGAGGCCaGCg -3'
miRNA:   3'- uuCGAGUuaa--UGGUGau-GCUCCGG-CG- -5'
10765 5' -51.5 NC_002794.1 + 120286 0.66 0.990559
Target:  5'- gGAGCUCGAgcacGCCGagccCGGGGCCuuGCu -3'
miRNA:   3'- -UUCGAGUUaa--UGGUgau-GCUCCGG--CG- -5'
10765 5' -51.5 NC_002794.1 + 95749 0.66 0.990559
Target:  5'- gGGGCUgG--UACuCGCgggGCGGcGGCCGCg -3'
miRNA:   3'- -UUCGAgUuaAUG-GUGa--UGCU-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 133996 0.66 0.990559
Target:  5'- aGAGgUCGGUcGCCgGgUGCGAGcGCUGCa -3'
miRNA:   3'- -UUCgAGUUAaUGG-UgAUGCUC-CGGCG- -5'
10765 5' -51.5 NC_002794.1 + 147315 0.66 0.990559
Target:  5'- gGAGUUCG--UGCgGCUcuuCGGGGCCGa -3'
miRNA:   3'- -UUCGAGUuaAUGgUGAu--GCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 53121 0.66 0.990433
Target:  5'- gGAGCUCGcgUcgACCGCgGCGcucagcccggcauAGGCCaGCg -3'
miRNA:   3'- -UUCGAGUuaA--UGGUGaUGC-------------UCCGG-CG- -5'
10765 5' -51.5 NC_002794.1 + 32286 0.66 0.98978
Target:  5'- cGAGCgacgccgccGCCGCcGCGGcGGCCGCg -3'
miRNA:   3'- -UUCGaguuaa---UGGUGaUGCU-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 152565 0.66 0.989233
Target:  5'- gGAGCggCGcUUcACCGCcGCGGcGGCCGCc -3'
miRNA:   3'- -UUCGa-GUuAA-UGGUGaUGCU-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 122890 0.67 0.987767
Target:  5'- cGAGCUCAAcgAgCGC-ACGGGcGCCGa -3'
miRNA:   3'- -UUCGAGUUaaUgGUGaUGCUC-CGGCg -5'
10765 5' -51.5 NC_002794.1 + 48139 0.67 0.98615
Target:  5'- aGGGCUCGAa-GCC-CUcgACGAGGCaGCg -3'
miRNA:   3'- -UUCGAGUUaaUGGuGA--UGCUCCGgCG- -5'
10765 5' -51.5 NC_002794.1 + 146693 0.67 0.98615
Target:  5'- -cGCUCGAg-GCCgACUGCGGGaGCUGg -3'
miRNA:   3'- uuCGAGUUaaUGG-UGAUGCUC-CGGCg -5'
10765 5' -51.5 NC_002794.1 + 49814 0.67 0.98615
Target:  5'- cAGCUCccgcgGCCACgucugauagGCGAGgcGCCGCc -3'
miRNA:   3'- uUCGAGuuaa-UGGUGa--------UGCUC--CGGCG- -5'
10765 5' -51.5 NC_002794.1 + 115321 0.67 0.984375
Target:  5'- -cGCaCGGUcGCCGCgGCGuccGGGCCGCu -3'
miRNA:   3'- uuCGaGUUAaUGGUGaUGC---UCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.