miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10765 5' -51.5 NC_002794.1 + 113307 0.67 0.984375
Target:  5'- -cGCUCGu---CCGCUACccgccGGGCCGUc -3'
miRNA:   3'- uuCGAGUuaauGGUGAUGc----UCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 127354 0.67 0.984375
Target:  5'- -cGCUCGcg-GCgGCgGCGcGGCCGCu -3'
miRNA:   3'- uuCGAGUuaaUGgUGaUGCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 115321 0.67 0.984375
Target:  5'- -cGCaCGGUcGCCGCgGCGuccGGGCCGCu -3'
miRNA:   3'- uuCGaGUUAaUGGUGaUGC---UCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 184806 0.67 0.984375
Target:  5'- cGGGCUCAGcaGCguC-ACGGGGCaCGCg -3'
miRNA:   3'- -UUCGAGUUaaUGguGaUGCUCCG-GCG- -5'
10765 5' -51.5 NC_002794.1 + 99511 0.67 0.984188
Target:  5'- uGAGCaccgucacguuuuUCAAcccgUAUCugUGCG-GGCCGCg -3'
miRNA:   3'- -UUCG-------------AGUUa---AUGGugAUGCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 111592 0.67 0.98323
Target:  5'- cAGCUCGAgcggggugaucuCCcagGCcgGCGGGGCCGCc -3'
miRNA:   3'- uUCGAGUUaau---------GG---UGa-UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 134693 0.67 0.982432
Target:  5'- uGGCUCGAccGCCuCUG-GGGGCCGg -3'
miRNA:   3'- uUCGAGUUaaUGGuGAUgCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 189034 0.67 0.982432
Target:  5'- -cGCUCGAccGCCAgcgGCG-GGCUGCg -3'
miRNA:   3'- uuCGAGUUaaUGGUga-UGCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 120194 0.67 0.982432
Target:  5'- cGGUUCAAggGCaCGa-GCGGGGUCGCg -3'
miRNA:   3'- uUCGAGUUaaUG-GUgaUGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 182175 0.67 0.982432
Target:  5'- gGAGCggcugUACCAUaACGGGGCCucgGCg -3'
miRNA:   3'- -UUCGaguuaAUGGUGaUGCUCCGG---CG- -5'
10765 5' -51.5 NC_002794.1 + 15390 0.67 0.982432
Target:  5'- cGAGUUCA---ACCAC-ACGcaccuGGCCGCc -3'
miRNA:   3'- -UUCGAGUuaaUGGUGaUGCu----CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 86955 0.67 0.980312
Target:  5'- cGAGCgUCGAcguCCGCUGCGGcGaGCUGCg -3'
miRNA:   3'- -UUCG-AGUUaauGGUGAUGCU-C-CGGCG- -5'
10765 5' -51.5 NC_002794.1 + 114124 0.67 0.980312
Target:  5'- cAGCUCGuucUUGCCGCcgGCcAGGgCGCg -3'
miRNA:   3'- uUCGAGUu--AAUGGUGa-UGcUCCgGCG- -5'
10765 5' -51.5 NC_002794.1 + 116805 0.68 0.978007
Target:  5'- cGGCUCGGgcGCCGuaGCGcGGGUCGCu -3'
miRNA:   3'- uUCGAGUUaaUGGUgaUGC-UCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 66832 0.68 0.978007
Target:  5'- cGGCgcgacucCGGgcGCCGCcgucggcgcgGCGAGGCCGCg -3'
miRNA:   3'- uUCGa------GUUaaUGGUGa---------UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 85389 0.68 0.978007
Target:  5'- -uGCUCAcg-GCCA----GAGGCCGCg -3'
miRNA:   3'- uuCGAGUuaaUGGUgaugCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 121233 0.68 0.97551
Target:  5'- -cGCUaCAGUcGCCGCUGcCGccGCCGCc -3'
miRNA:   3'- uuCGA-GUUAaUGGUGAU-GCucCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 148108 0.68 0.973915
Target:  5'- -cGCUCAAgaaGCgACggucggugucgggcGCGGGGCCGCc -3'
miRNA:   3'- uuCGAGUUaa-UGgUGa-------------UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 22613 0.68 0.969903
Target:  5'- -cGCUCGAgccgaucggGCCGCU-CGAGG-CGCu -3'
miRNA:   3'- uuCGAGUUaa-------UGGUGAuGCUCCgGCG- -5'
10765 5' -51.5 NC_002794.1 + 185367 0.68 0.969903
Target:  5'- cGGGC-CGAacGCCGCgaGCGAGGCCaGCc -3'
miRNA:   3'- -UUCGaGUUaaUGGUGa-UGCUCCGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.