miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10765 5' -51.5 NC_002794.1 + 1 0.69 0.947719
Target:  5'- cGAGCgcCGAgacgcgGCCGCgaacacgaaaACGAGGCCGCc -3'
miRNA:   3'- -UUCGa-GUUaa----UGGUGa---------UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 10976 0.69 0.963434
Target:  5'- -cGUcCGAUgcCUGCUcCGAGGCCGCa -3'
miRNA:   3'- uuCGaGUUAauGGUGAuGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 11630 0.66 0.993782
Target:  5'- uAGGCUCGAc--CCACaGCGAcgGGCgGCc -3'
miRNA:   3'- -UUCGAGUUaauGGUGaUGCU--CCGgCG- -5'
10765 5' -51.5 NC_002794.1 + 11708 0.66 0.994633
Target:  5'- gAGGCUCGGUcgGCCACUugcaGCuGuGGCaGCa -3'
miRNA:   3'- -UUCGAGUUAa-UGGUGA----UG-CuCCGgCG- -5'
10765 5' -51.5 NC_002794.1 + 14601 0.7 0.928082
Target:  5'- cGAGCgcgcCGGgcACCGCgACGGGGCCGg -3'
miRNA:   3'- -UUCGa---GUUaaUGGUGaUGCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 14763 0.7 0.92754
Target:  5'- gAAGCcgUCGAg-GCCGCUgaggccgGCGAGGCCGg -3'
miRNA:   3'- -UUCG--AGUUaaUGGUGA-------UGCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 14950 0.66 0.994633
Target:  5'- cGGCUCGcccGCCGCcuCGAaGCCGCg -3'
miRNA:   3'- uUCGAGUuaaUGGUGauGCUcCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 15390 0.67 0.982432
Target:  5'- cGAGUUCA---ACCAC-ACGcaccuGGCCGCc -3'
miRNA:   3'- -UUCGAGUuaaUGGUGaUGCu----CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 18181 0.71 0.8911
Target:  5'- -cGUUCAuccGCCACcgcgACGAGGCCGa -3'
miRNA:   3'- uuCGAGUuaaUGGUGa---UGCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 22613 0.68 0.969903
Target:  5'- -cGCUCGAgccgaucggGCCGCU-CGAGG-CGCu -3'
miRNA:   3'- uuCGAGUUaa-------UGGUGAuGCUCCgGCG- -5'
10765 5' -51.5 NC_002794.1 + 23962 0.69 0.952007
Target:  5'- uGGCUCcga-GCCAgcgGCGAGGCCGg -3'
miRNA:   3'- uUCGAGuuaaUGGUga-UGCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 27471 0.71 0.916754
Target:  5'- cGGCUCGAcucgucucgUCGCgcCGAGGCCGCg -3'
miRNA:   3'- uUCGAGUUaau------GGUGauGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 32286 0.66 0.98978
Target:  5'- cGAGCgacgccgccGCCGCcGCGGcGGCCGCg -3'
miRNA:   3'- -UUCGaguuaa---UGGUGaUGCU-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 39525 0.7 0.943185
Target:  5'- cAGUUCGGcUACCACc-UGGGGCUGCu -3'
miRNA:   3'- uUCGAGUUaAUGGUGauGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 44248 0.69 0.963434
Target:  5'- cGGCUCGG-UGCCGg-GCGGcucGGCCGCc -3'
miRNA:   3'- uUCGAGUUaAUGGUgaUGCU---CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 46249 0.66 0.994633
Target:  5'- cGGCUCGu---CCGCUuccuCG-GGCCGUc -3'
miRNA:   3'- uUCGAGUuaauGGUGAu---GCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 48139 0.67 0.98615
Target:  5'- aGGGCUCGAa-GCC-CUcgACGAGGCaGCg -3'
miRNA:   3'- -UUCGAGUUaaUGGuGA--UGCUCCGgCG- -5'
10765 5' -51.5 NC_002794.1 + 48537 0.71 0.897883
Target:  5'- cAGGCUCGGgucggccgACCACUcCGccGGCCGCc -3'
miRNA:   3'- -UUCGAGUUaa------UGGUGAuGCu-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 48892 0.76 0.683004
Target:  5'- cAGGC-CAgcGUUGCCGCagcuCGGGGCCGCu -3'
miRNA:   3'- -UUCGaGU--UAAUGGUGau--GCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 49004 0.7 0.928082
Target:  5'- gAAGCUCuc---CCGCgccGCGGcGGCCGCg -3'
miRNA:   3'- -UUCGAGuuaauGGUGa--UGCU-CCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.