miRNA display CGI


Results 21 - 40 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10765 5' -51.5 NC_002794.1 + 49814 0.67 0.98615
Target:  5'- cAGCUCccgcgGCCACgucugauagGCGAGgcGCCGCc -3'
miRNA:   3'- uUCGAGuuaa-UGGUGa--------UGCUC--CGGCG- -5'
10765 5' -51.5 NC_002794.1 + 52751 0.7 0.928082
Target:  5'- -cGUUCGuagUACCGCgccGCGgcccGGGCCGCg -3'
miRNA:   3'- uuCGAGUua-AUGGUGa--UGC----UCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 53121 0.66 0.990433
Target:  5'- gGAGCUCGcgUcgACCGCgGCGcucagcccggcauAGGCCaGCg -3'
miRNA:   3'- -UUCGAGUuaA--UGGUGaUGC-------------UCCGG-CG- -5'
10765 5' -51.5 NC_002794.1 + 57151 0.66 0.994633
Target:  5'- -uGCUCAc--GCUGCUGCGcaaGGcGCCGCc -3'
miRNA:   3'- uuCGAGUuaaUGGUGAUGC---UC-CGGCG- -5'
10765 5' -51.5 NC_002794.1 + 58001 0.66 0.993782
Target:  5'- cAGGCcuUCGuc-GCCGC--CGGGGCCGCc -3'
miRNA:   3'- -UUCG--AGUuaaUGGUGauGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 59290 0.66 0.993782
Target:  5'- -cGCUC----GCCGCU-CGAcGCCGCg -3'
miRNA:   3'- uuCGAGuuaaUGGUGAuGCUcCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 61944 0.66 0.990559
Target:  5'- -cGCUCGcccccACCGCcccCGAGGCCaGCg -3'
miRNA:   3'- uuCGAGUuaa--UGGUGau-GCUCCGG-CG- -5'
10765 5' -51.5 NC_002794.1 + 62281 0.73 0.819912
Target:  5'- gGAGCUCGGccugcUGCCGCUcCGAGcCCGCg -3'
miRNA:   3'- -UUCGAGUUa----AUGGUGAuGCUCcGGCG- -5'
10765 5' -51.5 NC_002794.1 + 66832 0.68 0.978007
Target:  5'- cGGCgcgacucCGGgcGCCGCcgucggcgcgGCGAGGCCGCg -3'
miRNA:   3'- uUCGa------GUUaaUGGUGa---------UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 71726 0.66 0.994633
Target:  5'- cGGgUCGuugGCCGCcACGccgaAGGCCGCc -3'
miRNA:   3'- uUCgAGUuaaUGGUGaUGC----UCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 73729 0.66 0.992824
Target:  5'- -cGCUCA---ACUACUACGA--CCGCg -3'
miRNA:   3'- uuCGAGUuaaUGGUGAUGCUccGGCG- -5'
10765 5' -51.5 NC_002794.1 + 78146 0.72 0.861617
Target:  5'- -cGCUCGAgacGCCGCU-CGAG-CCGCg -3'
miRNA:   3'- uuCGAGUUaa-UGGUGAuGCUCcGGCG- -5'
10765 5' -51.5 NC_002794.1 + 80412 0.7 0.938401
Target:  5'- cGGCcCAggUGgCGCcggGCGGGGCCGCc -3'
miRNA:   3'- uUCGaGUuaAUgGUGa--UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 85389 0.68 0.978007
Target:  5'- -uGCUCAcg-GCCA----GAGGCCGCg -3'
miRNA:   3'- uuCGAGUuaaUGGUgaugCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 85940 0.74 0.773718
Target:  5'- cGGGCUCGGaaccgacCCGgaACGGGGCCGCg -3'
miRNA:   3'- -UUCGAGUUaau----GGUgaUGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 86877 0.66 0.992824
Target:  5'- cGGCUaggCAGUagGCC-CgaucccgGCGGGGCCGCc -3'
miRNA:   3'- uUCGA---GUUAa-UGGuGa------UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 86955 0.67 0.980312
Target:  5'- cGAGCgUCGAcguCCGCUGCGGcGaGCUGCg -3'
miRNA:   3'- -UUCG-AGUUaauGGUGAUGCU-C-CGGCG- -5'
10765 5' -51.5 NC_002794.1 + 90455 0.77 0.639002
Target:  5'- cGAGCUUuucggcgagGCCGCgcgcgGCGGGGCCGCc -3'
miRNA:   3'- -UUCGAGuuaa-----UGGUGa----UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 91029 0.66 0.992824
Target:  5'- cGAGCUCugggcgGCC-CUcgggguggACGGGGCgCGCg -3'
miRNA:   3'- -UUCGAGuuaa--UGGuGA--------UGCUCCG-GCG- -5'
10765 5' -51.5 NC_002794.1 + 92422 0.71 0.910712
Target:  5'- cGAGCacgggCGAggACaCGCUggccguGCGGGGCCGCg -3'
miRNA:   3'- -UUCGa----GUUaaUG-GUGA------UGCUCCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.