miRNA display CGI


Results 41 - 60 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10765 5' -51.5 NC_002794.1 + 93663 0.66 0.992515
Target:  5'- gGGGCggCGAUUACCGCUacauGCGAcagcguuucguccuGGCCacGCg -3'
miRNA:   3'- -UUCGa-GUUAAUGGUGA----UGCU--------------CCGG--CG- -5'
10765 5' -51.5 NC_002794.1 + 94989 0.7 0.922544
Target:  5'- gGAGCUCuGUcGCCGCUugcugucgcugAUGGGGCgGCu -3'
miRNA:   3'- -UUCGAGuUAaUGGUGA-----------UGCUCCGgCG- -5'
10765 5' -51.5 NC_002794.1 + 95749 0.66 0.990559
Target:  5'- gGGGCUgG--UACuCGCgggGCGGcGGCCGCg -3'
miRNA:   3'- -UUCGAgUuaAUG-GUGa--UGCU-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 99511 0.67 0.984188
Target:  5'- uGAGCaccgucacguuuuUCAAcccgUAUCugUGCG-GGCCGCg -3'
miRNA:   3'- -UUCG-------------AGUUa---AUGGugAUGCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 101097 1.09 0.008616
Target:  5'- aAAGCUCAAUUACCACUACGAGGCCGCc -3'
miRNA:   3'- -UUCGAGUUAAUGGUGAUGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 102746 0.75 0.703726
Target:  5'- cGAGCUggcCGAggACCcggACUACGuGGCCGCg -3'
miRNA:   3'- -UUCGA---GUUaaUGG---UGAUGCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 103796 0.66 0.992824
Target:  5'- uGAGCUUGAggUGCgC-CUGCGAcGGCgGCg -3'
miRNA:   3'- -UUCGAGUUa-AUG-GuGAUGCU-CCGgCG- -5'
10765 5' -51.5 NC_002794.1 + 106237 0.7 0.922544
Target:  5'- -cGCUCGGgucgcagaccGCCGCgaaccgGCGAGcGCCGCg -3'
miRNA:   3'- uuCGAGUUaa--------UGGUGa-----UGCUC-CGGCG- -5'
10765 5' -51.5 NC_002794.1 + 110180 0.73 0.845541
Target:  5'- gAGGCUCGAgauggGCCGCUGuucgaacaaGGGGUCGCu -3'
miRNA:   3'- -UUCGAGUUaa---UGGUGAUg--------CUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 110319 0.67 0.984375
Target:  5'- -cGCUC----GCCGCcGCGAcGCCGCg -3'
miRNA:   3'- uuCGAGuuaaUGGUGaUGCUcCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 111592 0.67 0.98323
Target:  5'- cAGCUCGAgcggggugaucuCCcagGCcgGCGGGGCCGCc -3'
miRNA:   3'- uUCGAGUUaau---------GG---UGa-UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 112741 0.66 0.994633
Target:  5'- aAGGCgCGGUgcuCCGCggcgGCGGGGUCGg -3'
miRNA:   3'- -UUCGaGUUAau-GGUGa---UGCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 113307 0.67 0.984375
Target:  5'- -cGCUCGu---CCGCUACccgccGGGCCGUc -3'
miRNA:   3'- uuCGAGUuaauGGUGAUGc----UCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 114124 0.67 0.980312
Target:  5'- cAGCUCGuucUUGCCGCcgGCcAGGgCGCg -3'
miRNA:   3'- uUCGAGUu--AAUGGUGa-UGcUCCgGCG- -5'
10765 5' -51.5 NC_002794.1 + 114349 0.71 0.910712
Target:  5'- cGGCUCGuccgccgccAggGCCgGCUGCaGGGCCGCg -3'
miRNA:   3'- uUCGAGU---------UaaUGG-UGAUGcUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 114895 0.66 0.990559
Target:  5'- -uGCUCGGU--CCGCU-CGAGGagCGCg -3'
miRNA:   3'- uuCGAGUUAauGGUGAuGCUCCg-GCG- -5'
10765 5' -51.5 NC_002794.1 + 115321 0.67 0.984375
Target:  5'- -cGCaCGGUcGCCGCgGCGuccGGGCCGCu -3'
miRNA:   3'- uuCGaGUUAaUGGUGaUGC---UCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 116805 0.68 0.978007
Target:  5'- cGGCUCGGgcGCCGuaGCGcGGGUCGCu -3'
miRNA:   3'- uUCGAGUUaaUGGUgaUGC-UCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 120194 0.67 0.982432
Target:  5'- cGGUUCAAggGCaCGa-GCGGGGUCGCg -3'
miRNA:   3'- uUCGAGUUaaUG-GUgaUGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 120286 0.66 0.990559
Target:  5'- gGAGCUCGAgcacGCCGagccCGGGGCCuuGCu -3'
miRNA:   3'- -UUCGAGUUaa--UGGUgau-GCUCCGG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.