miRNA display CGI


Results 1 - 20 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10765 5' -51.5 NC_002794.1 + 191810 0.74 0.754239
Target:  5'- -cGCUCG---GCCGCU-CGAGGaCCGCg -3'
miRNA:   3'- uuCGAGUuaaUGGUGAuGCUCC-GGCG- -5'
10765 5' -51.5 NC_002794.1 + 189118 0.69 0.952007
Target:  5'- cGGGC-CAGgugguCCAagUGCGGGGCCGCc -3'
miRNA:   3'- -UUCGaGUUaau--GGUg-AUGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 189034 0.67 0.982432
Target:  5'- -cGCUCGAccGCCAgcgGCG-GGCUGCg -3'
miRNA:   3'- uuCGAGUUaaUGGUga-UGCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 187471 0.74 0.773718
Target:  5'- -cGCUCGGcgcgcgccggGCCGaggACGAGGCCGCg -3'
miRNA:   3'- uuCGAGUUaa--------UGGUga-UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 185460 0.66 0.990559
Target:  5'- -cGCgaCAAacGCCGCggGCGGcGGCCGCg -3'
miRNA:   3'- uuCGa-GUUaaUGGUGa-UGCU-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 185367 0.68 0.969903
Target:  5'- cGGGC-CGAacGCCGCgaGCGAGGCCaGCc -3'
miRNA:   3'- -UUCGaGUUaaUGGUGa-UGCUCCGG-CG- -5'
10765 5' -51.5 NC_002794.1 + 184806 0.67 0.984375
Target:  5'- cGGGCUCAGcaGCguC-ACGGGGCaCGCg -3'
miRNA:   3'- -UUCGAGUUaaUGguGaUGCUCCG-GCG- -5'
10765 5' -51.5 NC_002794.1 + 184581 0.69 0.956053
Target:  5'- cGGCggCGGcgGCCAC-GCGcGGCCGCg -3'
miRNA:   3'- uUCGa-GUUaaUGGUGaUGCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 184448 0.66 0.991753
Target:  5'- uGAGCgcgCcgcUGCCGCccGCG-GGCCGCg -3'
miRNA:   3'- -UUCGa--GuuaAUGGUGa-UGCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 182175 0.67 0.982432
Target:  5'- gGAGCggcugUACCAUaACGGGGCCucgGCg -3'
miRNA:   3'- -UUCGaguuaAUGGUGaUGCUCCGG---CG- -5'
10765 5' -51.5 NC_002794.1 + 181850 0.66 0.993782
Target:  5'- cGAGCUCGcacuccAUgaucacgcuCCGCUGCcccGGGGUCGCg -3'
miRNA:   3'- -UUCGAGU------UAau-------GGUGAUG---CUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 181567 0.66 0.994633
Target:  5'- cGGGCcaaUCAGgaucgACagGCUGCG-GGCCGCg -3'
miRNA:   3'- -UUCG---AGUUaa---UGg-UGAUGCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 180004 0.7 0.942248
Target:  5'- cGGCgggcccgGCCACgACGAcGGCCGCg -3'
miRNA:   3'- uUCGaguuaa-UGGUGaUGCU-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 179973 0.69 0.947719
Target:  5'- gGAGCggCAGgaGCCAagGCGGuGGCCGCg -3'
miRNA:   3'- -UUCGa-GUUaaUGGUgaUGCU-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 179565 0.69 0.947719
Target:  5'- -uGCUCGAagACCgAUUugGAGGCCu- -3'
miRNA:   3'- uuCGAGUUaaUGG-UGAugCUCCGGcg -5'
10765 5' -51.5 NC_002794.1 + 177610 0.66 0.993782
Target:  5'- cGGgUCGGUcgAUCGCUccucgacgACGAGGCCGa -3'
miRNA:   3'- uUCgAGUUAa-UGGUGA--------UGCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 177132 0.66 0.994633
Target:  5'- gGAGUUCcuGUUGCCcCUGauucGGCCGCa -3'
miRNA:   3'- -UUCGAGu-UAAUGGuGAUgcu-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 152565 0.66 0.989233
Target:  5'- gGAGCggCGcUUcACCGCcGCGGcGGCCGCc -3'
miRNA:   3'- -UUCGa-GUuAA-UGGUGaUGCU-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 150482 0.71 0.897883
Target:  5'- uGGCUCAcgUGCaC-CUGCGGcGCCGCc -3'
miRNA:   3'- uUCGAGUuaAUG-GuGAUGCUcCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 150257 0.66 0.992824
Target:  5'- cGGCUCG--UGCCGCUcgguCGAcugacGCCGCa -3'
miRNA:   3'- uUCGAGUuaAUGGUGAu---GCUc----CGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.