miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10765 5' -51.5 NC_002794.1 + 149686 0.74 0.773718
Target:  5'- -cGCUCGAcugGCCGCg--GGGGCCGCc -3'
miRNA:   3'- uuCGAGUUaa-UGGUGaugCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 148108 0.68 0.973915
Target:  5'- -cGCUCAAgaaGCgACggucggugucgggcGCGGGGCCGCc -3'
miRNA:   3'- uuCGAGUUaa-UGgUGa-------------UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 147399 0.66 0.992824
Target:  5'- cGGCUCGAU--CCGCcACGAGcGCuaCGCg -3'
miRNA:   3'- uUCGAGUUAauGGUGaUGCUC-CG--GCG- -5'
10765 5' -51.5 NC_002794.1 + 147315 0.66 0.990559
Target:  5'- gGAGUUCG--UGCgGCUcuuCGGGGCCGa -3'
miRNA:   3'- -UUCGAGUuaAUGgUGAu--GCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 147138 0.68 0.96678
Target:  5'- cGGUUCGAgacgGCCc---CGGGGCCGCg -3'
miRNA:   3'- uUCGAGUUaa--UGGugauGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 146693 0.67 0.98615
Target:  5'- -cGCUCGAg-GCCgACUGCGGGaGCUGg -3'
miRNA:   3'- uuCGAGUUaaUGG-UGAUGCUC-CGGCg -5'
10765 5' -51.5 NC_002794.1 + 145854 0.7 0.943185
Target:  5'- -cGCUCGAcgaGCCGC--CGAGGgCCGCg -3'
miRNA:   3'- uuCGAGUUaa-UGGUGauGCUCC-GGCG- -5'
10765 5' -51.5 NC_002794.1 + 139019 0.66 0.994633
Target:  5'- aGAGCUC----GCCGCgGCGAaacuGGCCGa -3'
miRNA:   3'- -UUCGAGuuaaUGGUGaUGCU----CCGGCg -5'
10765 5' -51.5 NC_002794.1 + 135713 0.66 0.994633
Target:  5'- -cGCUCGA--GCUGCUGCGuAGcaucugcaccuGCCGCg -3'
miRNA:   3'- uuCGAGUUaaUGGUGAUGC-UC-----------CGGCG- -5'
10765 5' -51.5 NC_002794.1 + 134693 0.67 0.982432
Target:  5'- uGGCUCGAccGCCuCUG-GGGGCCGg -3'
miRNA:   3'- uUCGAGUUaaUGGuGAUgCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 134147 0.71 0.897883
Target:  5'- gAAGCUCGGUccgUGuuGCUGgcCGuGGCCGCg -3'
miRNA:   3'- -UUCGAGUUA---AUggUGAU--GCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 133996 0.66 0.990559
Target:  5'- aGAGgUCGGUcGCCgGgUGCGAGcGCUGCa -3'
miRNA:   3'- -UUCgAGUUAaUGG-UgAUGCUC-CGGCG- -5'
10765 5' -51.5 NC_002794.1 + 130377 0.66 0.991753
Target:  5'- -cGcCUCA---ACCGCU--GAGGCCGCc -3'
miRNA:   3'- uuC-GAGUuaaUGGUGAugCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 127354 0.67 0.984375
Target:  5'- -cGCUCGcg-GCgGCgGCGcGGCCGCu -3'
miRNA:   3'- uuCGAGUuaaUGgUGaUGCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 126359 0.74 0.76404
Target:  5'- cGGCUcCGAUUucGCCGCUGCGuGGgCGCc -3'
miRNA:   3'- uUCGA-GUUAA--UGGUGAUGCuCCgGCG- -5'
10765 5' -51.5 NC_002794.1 + 123459 0.66 0.994633
Target:  5'- uGGC-CGAgcACCuguACUACGAGGCgcUGCg -3'
miRNA:   3'- uUCGaGUUaaUGG---UGAUGCUCCG--GCG- -5'
10765 5' -51.5 NC_002794.1 + 122890 0.67 0.987767
Target:  5'- cGAGCUCAAcgAgCGC-ACGGGcGCCGa -3'
miRNA:   3'- -UUCGAGUUaaUgGUGaUGCUC-CGGCg -5'
10765 5' -51.5 NC_002794.1 + 121233 0.68 0.97551
Target:  5'- -cGCUaCAGUcGCCGCUGcCGccGCCGCc -3'
miRNA:   3'- uuCGA-GUUAaUGGUGAU-GCucCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 120286 0.66 0.990559
Target:  5'- gGAGCUCGAgcacGCCGagccCGGGGCCuuGCu -3'
miRNA:   3'- -UUCGAGUUaa--UGGUgau-GCUCCGG--CG- -5'
10765 5' -51.5 NC_002794.1 + 120194 0.67 0.982432
Target:  5'- cGGUUCAAggGCaCGa-GCGGGGUCGCg -3'
miRNA:   3'- uUCGAGUUaaUG-GUgaUGCUCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.