miRNA display CGI


Results 41 - 60 of 98 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10765 5' -51.5 NC_002794.1 + 46249 0.66 0.994633
Target:  5'- cGGCUCGu---CCGCUuccuCG-GGCCGUc -3'
miRNA:   3'- uUCGAGUuaauGGUGAu---GCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 11708 0.66 0.994633
Target:  5'- gAGGCUCGGUcgGCCACUugcaGCuGuGGCaGCa -3'
miRNA:   3'- -UUCGAGUUAa-UGGUGA----UG-CuCCGgCG- -5'
10765 5' -51.5 NC_002794.1 + 112741 0.66 0.994633
Target:  5'- aAGGCgCGGUgcuCCGCggcgGCGGGGUCGg -3'
miRNA:   3'- -UUCGaGUUAau-GGUGa---UGCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 177132 0.66 0.994633
Target:  5'- gGAGUUCcuGUUGCCcCUGauucGGCCGCa -3'
miRNA:   3'- -UUCGAGu-UAAUGGuGAUgcu-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 139019 0.66 0.994633
Target:  5'- aGAGCUC----GCCGCgGCGAaacuGGCCGa -3'
miRNA:   3'- -UUCGAGuuaaUGGUGaUGCU----CCGGCg -5'
10765 5' -51.5 NC_002794.1 + 59290 0.66 0.993782
Target:  5'- -cGCUC----GCCGCU-CGAcGCCGCg -3'
miRNA:   3'- uuCGAGuuaaUGGUGAuGCUcCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 181850 0.66 0.993782
Target:  5'- cGAGCUCGcacuccAUgaucacgcuCCGCUGCcccGGGGUCGCg -3'
miRNA:   3'- -UUCGAGU------UAau-------GGUGAUG---CUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 120286 0.66 0.990559
Target:  5'- gGAGCUCGAgcacGCCGagccCGGGGCCuuGCu -3'
miRNA:   3'- -UUCGAGUUaa--UGGUgau-GCUCCGG--CG- -5'
10765 5' -51.5 NC_002794.1 + 95749 0.66 0.990559
Target:  5'- gGGGCUgG--UACuCGCgggGCGGcGGCCGCg -3'
miRNA:   3'- -UUCGAgUuaAUG-GUGa--UGCU-CCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 184448 0.66 0.991753
Target:  5'- uGAGCgcgCcgcUGCCGCccGCG-GGCCGCg -3'
miRNA:   3'- -UUCGa--GuuaAUGGUGa-UGCuCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 130377 0.66 0.991753
Target:  5'- -cGcCUCA---ACCGCU--GAGGCCGCc -3'
miRNA:   3'- uuC-GAGUuaaUGGUGAugCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 133996 0.66 0.990559
Target:  5'- aGAGgUCGGUcGCCgGgUGCGAGcGCUGCa -3'
miRNA:   3'- -UUCgAGUUAaUGG-UgAUGCUC-CGGCG- -5'
10765 5' -51.5 NC_002794.1 + 147315 0.66 0.990559
Target:  5'- gGAGUUCG--UGCgGCUcuuCGGGGCCGa -3'
miRNA:   3'- -UUCGAGUuaAUGgUGAu--GCUCCGGCg -5'
10765 5' -51.5 NC_002794.1 + 150257 0.66 0.992824
Target:  5'- cGGCUCG--UGCCGCUcgguCGAcugacGCCGCa -3'
miRNA:   3'- uUCGAGUuaAUGGUGAu---GCUc----CGGCG- -5'
10765 5' -51.5 NC_002794.1 + 147399 0.66 0.992824
Target:  5'- cGGCUCGAU--CCGCcACGAGcGCuaCGCg -3'
miRNA:   3'- uUCGAGUUAauGGUGaUGCUC-CG--GCG- -5'
10765 5' -51.5 NC_002794.1 + 103796 0.66 0.992824
Target:  5'- uGAGCUUGAggUGCgC-CUGCGAcGGCgGCg -3'
miRNA:   3'- -UUCGAGUUa-AUG-GuGAUGCU-CCGgCG- -5'
10765 5' -51.5 NC_002794.1 + 86877 0.66 0.992824
Target:  5'- cGGCUaggCAGUagGCC-CgaucccgGCGGGGCCGCc -3'
miRNA:   3'- uUCGA---GUUAa-UGGuGa------UGCUCCGGCG- -5'
10765 5' -51.5 NC_002794.1 + 73729 0.66 0.992824
Target:  5'- -cGCUCA---ACUACUACGA--CCGCg -3'
miRNA:   3'- uuCGAGUuaaUGGUGAUGCUccGGCG- -5'
10765 5' -51.5 NC_002794.1 + 93663 0.66 0.992515
Target:  5'- gGGGCggCGAUUACCGCUacauGCGAcagcguuucguccuGGCCacGCg -3'
miRNA:   3'- -UUCGa-GUUAAUGGUGA----UGCU--------------CCGG--CG- -5'
10765 5' -51.5 NC_002794.1 + 91029 0.66 0.992824
Target:  5'- cGAGCUCugggcgGCC-CUcgggguggACGGGGCgCGCg -3'
miRNA:   3'- -UUCGAGuuaa--UGGuGA--------UGCUCCG-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.