miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10766 3' -54.5 NC_002794.1 + 114547 0.66 0.974738
Target:  5'- --cUGCG-CGAgcUGuUCUUCGGCCAGGc -3'
miRNA:   3'- gacACGCaGUU--GC-AGAAGCCGGUCCu -5'
10766 3' -54.5 NC_002794.1 + 48600 0.66 0.974738
Target:  5'- ---cGCGUCGcCGUCggcgUCGGCCucagacgcGGAg -3'
miRNA:   3'- gacaCGCAGUuGCAGa---AGCCGGu-------CCU- -5'
10766 3' -54.5 NC_002794.1 + 59193 0.66 0.97396
Target:  5'- -cGUGgcggucgacgcgcaCGUCGGCGUC-UCGGCCGcGGc -3'
miRNA:   3'- gaCAC--------------GCAGUUGCAGaAGCCGGU-CCu -5'
10766 3' -54.5 NC_002794.1 + 32932 0.66 0.972079
Target:  5'- ---gGCGggaAGCGcUCggCGGCCAGGGa -3'
miRNA:   3'- gacaCGCag-UUGC-AGaaGCCGGUCCU- -5'
10766 3' -54.5 NC_002794.1 + 73855 0.66 0.972079
Target:  5'- ---cGCGcUCAugGUCUUCgucgcGGaCCGGGAc -3'
miRNA:   3'- gacaCGC-AGUugCAGAAG-----CC-GGUCCU- -5'
10766 3' -54.5 NC_002794.1 + 42464 0.66 0.969223
Target:  5'- aUG-GCGUCGuccAUGUCgcgCGcGCCGGGGc -3'
miRNA:   3'- gACaCGCAGU---UGCAGaa-GC-CGGUCCU- -5'
10766 3' -54.5 NC_002794.1 + 188072 0.66 0.969223
Target:  5'- ---aGCGUCAcCGUCgguUCGGCCAa-- -3'
miRNA:   3'- gacaCGCAGUuGCAGa--AGCCGGUccu -5'
10766 3' -54.5 NC_002794.1 + 116132 0.66 0.966165
Target:  5'- ---cGCGgcggCGGCGgCggCGGCCAGGGc -3'
miRNA:   3'- gacaCGCa---GUUGCaGaaGCCGGUCCU- -5'
10766 3' -54.5 NC_002794.1 + 188620 0.67 0.938678
Target:  5'- gUGUGCGaaAACGUCUcgCGGacCCGGGu -3'
miRNA:   3'- gACACGCagUUGCAGAa-GCC--GGUCCu -5'
10766 3' -54.5 NC_002794.1 + 118238 0.67 0.938678
Target:  5'- uCUGgagGaUGUCGGCGggCUggaggUCGGCCGGGGc -3'
miRNA:   3'- -GACa--C-GCAGUUGCa-GA-----AGCCGGUCCU- -5'
10766 3' -54.5 NC_002794.1 + 72546 0.68 0.928765
Target:  5'- ---cGCG-CGugGUCgcgcaacgCGGCCGGGAa -3'
miRNA:   3'- gacaCGCaGUugCAGaa------GCCGGUCCU- -5'
10766 3' -54.5 NC_002794.1 + 72109 0.68 0.906123
Target:  5'- -gGUGC-UUAACGgCUucauccugucgcUCGGCCAGGAa -3'
miRNA:   3'- gaCACGcAGUUGCaGA------------AGCCGGUCCU- -5'
10766 3' -54.5 NC_002794.1 + 98403 0.69 0.899881
Target:  5'- -aGUGCGUCGAgGUCgaucaggauaCGGuCCAGGu -3'
miRNA:   3'- gaCACGCAGUUgCAGaa--------GCC-GGUCCu -5'
10766 3' -54.5 NC_002794.1 + 99927 0.7 0.865323
Target:  5'- -cGUGCGgCGugGUCUugcggcuguUCGGCCGGa- -3'
miRNA:   3'- gaCACGCaGUugCAGA---------AGCCGGUCcu -5'
10766 3' -54.5 NC_002794.1 + 14285 0.74 0.644442
Target:  5'- gCUGgaGCGUCAGCGUCga-GGCgCGGGGu -3'
miRNA:   3'- -GACa-CGCAGUUGCAGaagCCG-GUCCU- -5'
10766 3' -54.5 NC_002794.1 + 99976 1.08 0.005766
Target:  5'- uCUGUGCGUCAACGUCUUCGGCCAGGAc -3'
miRNA:   3'- -GACACGCAGUUGCAGAAGCCGGUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.