miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10766 5' -56.8 NC_002794.1 + 64807 0.66 0.91312
Target:  5'- --aGCgacGCCGCggACGGCGGCGaGCc- -3'
miRNA:   3'- aaaUGa--CGGCGa-UGCCGCUGCgCGuc -5'
10766 5' -56.8 NC_002794.1 + 157668 0.66 0.91312
Target:  5'- --cGCUgGCgGCUugGGCcgcuuGGCGUGCAc -3'
miRNA:   3'- aaaUGA-CGgCGAugCCG-----CUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 36950 0.66 0.91312
Target:  5'- --cGC-GUCGC-GCGGCGGCaggcagucGCGCAGg -3'
miRNA:   3'- aaaUGaCGGCGaUGCCGCUG--------CGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 53250 0.66 0.91312
Target:  5'- -----cGCCGCgcCGGCGucgcCGCGCGa -3'
miRNA:   3'- aaaugaCGGCGauGCCGCu---GCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 20454 0.66 0.91312
Target:  5'- -cUGgaGCCGCcucUGCGGCcccgaaGACGUGCAc -3'
miRNA:   3'- aaAUgaCGGCG---AUGCCG------CUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 139911 0.66 0.911354
Target:  5'- --cGCagGCCGUcggACGGCacgcagcugucguuGACGUGCAGg -3'
miRNA:   3'- aaaUGa-CGGCGa--UGCCG--------------CUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 107536 0.66 0.907152
Target:  5'- --gGC-GCgGCgccgGCGGCGACGacCGCGGu -3'
miRNA:   3'- aaaUGaCGgCGa---UGCCGCUGC--GCGUC- -5'
10766 5' -56.8 NC_002794.1 + 44705 0.66 0.907152
Target:  5'- --cGCccgGCCGCgaccGCGGCGACGU-CGGc -3'
miRNA:   3'- aaaUGa--CGGCGa---UGCCGCUGCGcGUC- -5'
10766 5' -56.8 NC_002794.1 + 82955 0.66 0.907152
Target:  5'- -----cGCCGCgcACGGCGcgcacGCGaCGCAGg -3'
miRNA:   3'- aaaugaCGGCGa-UGCCGC-----UGC-GCGUC- -5'
10766 5' -56.8 NC_002794.1 + 76829 0.66 0.907152
Target:  5'- -----cGCCaGCggcCGGCGAUGCGCGc -3'
miRNA:   3'- aaaugaCGG-CGau-GCCGCUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 122168 0.66 0.907152
Target:  5'- -cUACcugGCCGagcACGGCG-CGCGCGu -3'
miRNA:   3'- aaAUGa--CGGCga-UGCCGCuGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 113167 0.66 0.907152
Target:  5'- --aGC-GCgCGCggGCGGCGGCGguCGCGGa -3'
miRNA:   3'- aaaUGaCG-GCGa-UGCCGCUGC--GCGUC- -5'
10766 5' -56.8 NC_002794.1 + 133739 0.66 0.907152
Target:  5'- -cUGCUGCCGUU-CGGUcGCcUGCAGg -3'
miRNA:   3'- aaAUGACGGCGAuGCCGcUGcGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 152355 0.66 0.907152
Target:  5'- -cUACgGCCGCUuggaacggauCGGCGACaCGCuGg -3'
miRNA:   3'- aaAUGaCGGCGAu---------GCCGCUGcGCGuC- -5'
10766 5' -56.8 NC_002794.1 + 118633 0.66 0.905317
Target:  5'- --aGCUGCUGCgccagcuCGGCGGCcagcucguccguggGCGCGa -3'
miRNA:   3'- aaaUGACGGCGau-----GCCGCUG--------------CGCGUc -5'
10766 5' -56.8 NC_002794.1 + 42219 0.66 0.905317
Target:  5'- ---uCUGCCGCUggaucagccgcgagACGGCGGCGaCGa-- -3'
miRNA:   3'- aaauGACGGCGA--------------UGCCGCUGC-GCguc -5'
10766 5' -56.8 NC_002794.1 + 91751 0.66 0.900954
Target:  5'- --aGgUGCCgGCggGCGGCacCGCGCAGg -3'
miRNA:   3'- aaaUgACGG-CGa-UGCCGcuGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 71302 0.66 0.900954
Target:  5'- --cGCcgGCgCGCUcggGCGGCGAgCGCGCc- -3'
miRNA:   3'- aaaUGa-CG-GCGA---UGCCGCU-GCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 58662 0.66 0.900954
Target:  5'- --gGCUGCUGCagcCGGCcgugcACGCGCAc -3'
miRNA:   3'- aaaUGACGGCGau-GCCGc----UGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 13126 0.66 0.900954
Target:  5'- -----cGCCGC-GCGGCucgcuCGCGCGGg -3'
miRNA:   3'- aaaugaCGGCGaUGCCGcu---GCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.