Results 1 - 20 of 151 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10766 | 5' | -56.8 | NC_002794.1 | + | 100010 | 1.07 | 0.003959 |
Target: 5'- uUUUACUGCCGCUACGGCGACGCGCAGa -3' miRNA: 3'- -AAAUGACGGCGAUGCCGCUGCGCGUC- -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 118383 | 0.83 | 0.14371 |
Target: 5'- -aUACUGCCGCU-CGGCGGCGCuCAGc -3' miRNA: 3'- aaAUGACGGCGAuGCCGCUGCGcGUC- -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 34252 | 0.79 | 0.24179 |
Target: 5'- --gGCUGCCGCcGCaGGCGgaccGCGCGCAGg -3' miRNA: 3'- aaaUGACGGCGaUG-CCGC----UGCGCGUC- -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 184457 | 0.77 | 0.349649 |
Target: 5'- --cGCUGCCGCccGCGGgccgcgcgaaCGGCGCGCGGg -3' miRNA: 3'- aaaUGACGGCGa-UGCC----------GCUGCGCGUC- -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 62291 | 0.76 | 0.373332 |
Target: 5'- -cUGCUGCCGCUcCGaGCccGCGCGCAGa -3' miRNA: 3'- aaAUGACGGCGAuGC-CGc-UGCGCGUC- -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 37737 | 0.76 | 0.39808 |
Target: 5'- --gGCggcGCCGCcgGCGGCGGCGCGgCGGc -3' miRNA: 3'- aaaUGa--CGGCGa-UGCCGCUGCGC-GUC- -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 150218 | 0.76 | 0.357423 |
Target: 5'- -cUGCUGCCgaGCUGCGuGCGACG-GCAGc -3' miRNA: 3'- aaAUGACGG--CGAUGC-CGCUGCgCGUC- -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 127343 | 0.75 | 0.432667 |
Target: 5'- --cGCUGCCgagacGCUcGCGGCGGCGgCGCGGc -3' miRNA: 3'- aaaUGACGG-----CGA-UGCCGCUGC-GCGUC- -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 95004 | 0.75 | 0.415153 |
Target: 5'- cUUGCUGUCGCUGauggGGCGGCuGUGCGGc -3' miRNA: 3'- aAAUGACGGCGAUg---CCGCUG-CGCGUC- -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 184573 | 0.75 | 0.415153 |
Target: 5'- --cGCcGCCGCggcgGCGGCGgccACGCGCGGc -3' miRNA: 3'- aaaUGaCGGCGa---UGCCGC---UGCGCGUC- -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 91202 | 0.74 | 0.459725 |
Target: 5'- --cGCUGuUCGCggACGGCGACGCGaCGGc -3' miRNA: 3'- aaaUGAC-GGCGa-UGCCGCUGCGC-GUC- -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 125523 | 0.73 | 0.555632 |
Target: 5'- --aACgGCCGUcGCGGCGAacgaGCGCGGc -3' miRNA: 3'- aaaUGaCGGCGaUGCCGCUg---CGCGUC- -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 154374 | 0.73 | 0.535871 |
Target: 5'- -----gGCCGCgGCGGCGGCGgGCAc -3' miRNA: 3'- aaaugaCGGCGaUGCCGCUGCgCGUc -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 99586 | 0.73 | 0.506714 |
Target: 5'- -gUGCggagGgCGCgGCGGCGGCGCGCGc -3' miRNA: 3'- aaAUGa---CgGCGaUGCCGCUGCGCGUc -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 118169 | 0.72 | 0.605829 |
Target: 5'- --gGgUGUCGUagGCGGCGACGCGCc- -3' miRNA: 3'- aaaUgACGGCGa-UGCCGCUGCGCGuc -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 184021 | 0.72 | 0.575599 |
Target: 5'- --cGCcgGCCGCcACGGCaccGCGCGCAGc -3' miRNA: 3'- aaaUGa-CGGCGaUGCCGc--UGCGCGUC- -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 59362 | 0.72 | 0.615954 |
Target: 5'- --gGCUGCUGCgccaccACGGCGcCGCGCc- -3' miRNA: 3'- aaaUGACGGCGa-----UGCCGCuGCGCGuc -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 32296 | 0.72 | 0.585645 |
Target: 5'- --cGCcGCCGCcGCGGCGGcCGCGCc- -3' miRNA: 3'- aaaUGaCGGCGaUGCCGCU-GCGCGuc -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 49412 | 0.72 | 0.602795 |
Target: 5'- --gGCgGCCGCggcgGCGGCGGCcgucacggcguccgGCGCGGu -3' miRNA: 3'- aaaUGaCGGCGa---UGCCGCUG--------------CGCGUC- -5' |
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10766 | 5' | -56.8 | NC_002794.1 | + | 95769 | 0.72 | 0.615954 |
Target: 5'- --gGCgGCCGCgACGGCGGCcggggcgagagGCGCGGc -3' miRNA: 3'- aaaUGaCGGCGaUGCCGCUG-----------CGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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