miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10766 5' -56.8 NC_002794.1 + 100010 1.07 0.003959
Target:  5'- uUUUACUGCCGCUACGGCGACGCGCAGa -3'
miRNA:   3'- -AAAUGACGGCGAUGCCGCUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 118383 0.83 0.14371
Target:  5'- -aUACUGCCGCU-CGGCGGCGCuCAGc -3'
miRNA:   3'- aaAUGACGGCGAuGCCGCUGCGcGUC- -5'
10766 5' -56.8 NC_002794.1 + 34252 0.79 0.24179
Target:  5'- --gGCUGCCGCcGCaGGCGgaccGCGCGCAGg -3'
miRNA:   3'- aaaUGACGGCGaUG-CCGC----UGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 184457 0.77 0.349649
Target:  5'- --cGCUGCCGCccGCGGgccgcgcgaaCGGCGCGCGGg -3'
miRNA:   3'- aaaUGACGGCGa-UGCC----------GCUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 150218 0.76 0.357423
Target:  5'- -cUGCUGCCgaGCUGCGuGCGACG-GCAGc -3'
miRNA:   3'- aaAUGACGG--CGAUGC-CGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 62291 0.76 0.373332
Target:  5'- -cUGCUGCCGCUcCGaGCccGCGCGCAGa -3'
miRNA:   3'- aaAUGACGGCGAuGC-CGc-UGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 37737 0.76 0.39808
Target:  5'- --gGCggcGCCGCcgGCGGCGGCGCGgCGGc -3'
miRNA:   3'- aaaUGa--CGGCGa-UGCCGCUGCGC-GUC- -5'
10766 5' -56.8 NC_002794.1 + 95004 0.75 0.415153
Target:  5'- cUUGCUGUCGCUGauggGGCGGCuGUGCGGc -3'
miRNA:   3'- aAAUGACGGCGAUg---CCGCUG-CGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 184573 0.75 0.415153
Target:  5'- --cGCcGCCGCggcgGCGGCGgccACGCGCGGc -3'
miRNA:   3'- aaaUGaCGGCGa---UGCCGC---UGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 127343 0.75 0.432667
Target:  5'- --cGCUGCCgagacGCUcGCGGCGGCGgCGCGGc -3'
miRNA:   3'- aaaUGACGG-----CGA-UGCCGCUGC-GCGUC- -5'
10766 5' -56.8 NC_002794.1 + 91202 0.74 0.459725
Target:  5'- --cGCUGuUCGCggACGGCGACGCGaCGGc -3'
miRNA:   3'- aaaUGAC-GGCGa-UGCCGCUGCGC-GUC- -5'
10766 5' -56.8 NC_002794.1 + 99586 0.73 0.506714
Target:  5'- -gUGCggagGgCGCgGCGGCGGCGCGCGc -3'
miRNA:   3'- aaAUGa---CgGCGaUGCCGCUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 154374 0.73 0.535871
Target:  5'- -----gGCCGCgGCGGCGGCGgGCAc -3'
miRNA:   3'- aaaugaCGGCGaUGCCGCUGCgCGUc -5'
10766 5' -56.8 NC_002794.1 + 125523 0.73 0.555632
Target:  5'- --aACgGCCGUcGCGGCGAacgaGCGCGGc -3'
miRNA:   3'- aaaUGaCGGCGaUGCCGCUg---CGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 184021 0.72 0.575599
Target:  5'- --cGCcgGCCGCcACGGCaccGCGCGCAGc -3'
miRNA:   3'- aaaUGa-CGGCGaUGCCGc--UGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 32296 0.72 0.585645
Target:  5'- --cGCcGCCGCcGCGGCGGcCGCGCc- -3'
miRNA:   3'- aaaUGaCGGCGaUGCCGCU-GCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 49412 0.72 0.602795
Target:  5'- --gGCgGCCGCggcgGCGGCGGCcgucacggcguccgGCGCGGu -3'
miRNA:   3'- aaaUGaCGGCGa---UGCCGCUG--------------CGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 118169 0.72 0.605829
Target:  5'- --gGgUGUCGUagGCGGCGACGCGCc- -3'
miRNA:   3'- aaaUgACGGCGa-UGCCGCUGCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 95769 0.72 0.615954
Target:  5'- --gGCgGCCGCgACGGCGGCcggggcgagagGCGCGGc -3'
miRNA:   3'- aaaUGaCGGCGaUGCCGCUG-----------CGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 59362 0.72 0.615954
Target:  5'- --gGCUGCUGCgccaccACGGCGcCGCGCc- -3'
miRNA:   3'- aaaUGACGGCGa-----UGCCGCuGCGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.