miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10766 5' -56.8 NC_002794.1 + 18681 0.71 0.622035
Target:  5'- --gGCUGCCGCcgccgucuccggcACGGCGGCG-GCGGu -3'
miRNA:   3'- aaaUGACGGCGa------------UGCCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 151561 0.71 0.624063
Target:  5'- gUUGCUGCUGaCguagcgcccccCGGCGGCGCGCGc -3'
miRNA:   3'- aAAUGACGGC-Gau---------GCCGCUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 58834 0.71 0.62609
Target:  5'- ---cCUGCCGCgcgaggACGcCGACGUGCAGc -3'
miRNA:   3'- aaauGACGGCGa-----UGCcGCUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 66733 0.71 0.636231
Target:  5'- --cACcGCCgGCggugGCGGCGGCGCGUAc -3'
miRNA:   3'- aaaUGaCGG-CGa---UGCCGCUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 79436 0.71 0.636231
Target:  5'- --gGCgGCgGCgGCGGCGACcgGCGCGGa -3'
miRNA:   3'- aaaUGaCGgCGaUGCCGCUG--CGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 116129 0.71 0.646369
Target:  5'- -----cGCCGCgGCGGCGGCG-GCGGc -3'
miRNA:   3'- aaaugaCGGCGaUGCCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 73276 0.71 0.646369
Target:  5'- -----cGCCGaCcGCGGCGACGCGCc- -3'
miRNA:   3'- aaaugaCGGC-GaUGCCGCUGCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 147431 0.71 0.646369
Target:  5'- --cGCUGCUGCUggACGGCuacgGGCGCGUg- -3'
miRNA:   3'- aaaUGACGGCGA--UGCCG----CUGCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 59182 0.71 0.646369
Target:  5'- -cUGCUGgaccCCGUgGCGGuCGACGCGCAc -3'
miRNA:   3'- aaAUGAC----GGCGaUGCC-GCUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 129512 0.71 0.646369
Target:  5'- -----cGCCGCcGCGGuCGGCGCGCuGa -3'
miRNA:   3'- aaaugaCGGCGaUGCC-GCUGCGCGuC- -5'
10766 5' -56.8 NC_002794.1 + 185469 0.71 0.656496
Target:  5'- -----cGCCGCggGCGGCGGC-CGCGGc -3'
miRNA:   3'- aaaugaCGGCGa-UGCCGCUGcGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 187454 0.7 0.675677
Target:  5'- -cUGCcGCCGCU-CGGCGucgcucgGCGCGCGc -3'
miRNA:   3'- aaAUGaCGGCGAuGCCGC-------UGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 47756 0.7 0.686728
Target:  5'- --gGCgGCCGUggucGCGGCacaACGCGCAGg -3'
miRNA:   3'- aaaUGaCGGCGa---UGCCGc--UGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 114133 0.7 0.696728
Target:  5'- ---cUUGCCGC--CGGCcagGGCGCGCAGg -3'
miRNA:   3'- aaauGACGGCGauGCCG---CUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 61888 0.7 0.696728
Target:  5'- --gGC-GCCGC-GCGGCGA-GCGCGGc -3'
miRNA:   3'- aaaUGaCGGCGaUGCCGCUgCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 19837 0.7 0.706675
Target:  5'- -cUGCUGCacgGCUACGGgGACuGCGUg- -3'
miRNA:   3'- aaAUGACGg--CGAUGCCgCUG-CGCGuc -5'
10766 5' -56.8 NC_002794.1 + 145386 0.7 0.706675
Target:  5'- --cGCU-CCGCU-CGGUGGCGCGCc- -3'
miRNA:   3'- aaaUGAcGGCGAuGCCGCUGCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 34736 0.7 0.71656
Target:  5'- --gGCgGCCGCagaGCGcGCGACgGCGCGGu -3'
miRNA:   3'- aaaUGaCGGCGa--UGC-CGCUG-CGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 56323 0.7 0.726374
Target:  5'- --gGCgGCCGUggcCGGCGACGCgGCGa -3'
miRNA:   3'- aaaUGaCGGCGau-GCCGCUGCG-CGUc -5'
10766 5' -56.8 NC_002794.1 + 37817 0.7 0.726374
Target:  5'- --cGCUcccGCCGUcACGGCGACG-GCGGc -3'
miRNA:   3'- aaaUGA---CGGCGaUGCCGCUGCgCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.