miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10766 5' -56.8 NC_002794.1 + 14526 0.7 0.730278
Target:  5'- --gGC-GCCGCUcggccACGGCGcucucgcccccgucgACGCGCGGg -3'
miRNA:   3'- aaaUGaCGGCGA-----UGCCGC---------------UGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 107870 0.69 0.736108
Target:  5'- --cACUGCauCGCggaGGCGGCGCgGCGGg -3'
miRNA:   3'- aaaUGACG--GCGaugCCGCUGCG-CGUC- -5'
10766 5' -56.8 NC_002794.1 + 102503 0.69 0.736108
Target:  5'- ---cCUGuuGCaGCGGCuGGCGCGCGc -3'
miRNA:   3'- aaauGACggCGaUGCCG-CUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 116357 0.69 0.737077
Target:  5'- --cACgGCCGCgcgguccgaccgguCGGUGGCGUGCGGg -3'
miRNA:   3'- aaaUGaCGGCGau------------GCCGCUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 107216 0.69 0.745754
Target:  5'- --gGC-GCCGCcg-GGCGGCGCGCGa -3'
miRNA:   3'- aaaUGaCGGCGaugCCGCUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 92255 0.69 0.745754
Target:  5'- --gGCggcGUCGCUgGCGGCGGCGC-CGGg -3'
miRNA:   3'- aaaUGa--CGGCGA-UGCCGCUGCGcGUC- -5'
10766 5' -56.8 NC_002794.1 + 73312 0.69 0.755302
Target:  5'- ------aCCGCgACGGCGACGCGUAc -3'
miRNA:   3'- aaaugacGGCGaUGCCGCUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 59248 0.69 0.774069
Target:  5'- -cUGCUGCC-CUAcguCGGCGAgcaCGCGCGc -3'
miRNA:   3'- aaAUGACGGcGAU---GCCGCU---GCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 94212 0.69 0.774069
Target:  5'- -cUugUGaCgGUgGCGGCGACGgGCGGg -3'
miRNA:   3'- aaAugAC-GgCGaUGCCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 54627 0.69 0.774069
Target:  5'- gUUACUGuuGCacACcGCGGCGgGCAGa -3'
miRNA:   3'- aAAUGACggCGa-UGcCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 33583 0.69 0.774069
Target:  5'- -gUGgUGgaCCGcCUGCGGCgGACGCGCAu -3'
miRNA:   3'- aaAUgAC--GGC-GAUGCCG-CUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 145813 0.69 0.78327
Target:  5'- --cGCcGCCGCcgGCGGCGAgccgaGCGCGu -3'
miRNA:   3'- aaaUGaCGGCGa-UGCCGCUg----CGCGUc -5'
10766 5' -56.8 NC_002794.1 + 13277 0.68 0.792337
Target:  5'- --aGCgGCCGCUguugACGGCGGCauggGCGCu- -3'
miRNA:   3'- aaaUGaCGGCGA----UGCCGCUG----CGCGuc -5'
10766 5' -56.8 NC_002794.1 + 53758 0.68 0.792337
Target:  5'- --cGCcGCCGCUGcCGGCGGCGgGaCGc -3'
miRNA:   3'- aaaUGaCGGCGAU-GCCGCUGCgC-GUc -5'
10766 5' -56.8 NC_002794.1 + 138436 0.68 0.801263
Target:  5'- -----aGCCGCggugGCGGCGGCGCcuCGGc -3'
miRNA:   3'- aaaugaCGGCGa---UGCCGCUGCGc-GUC- -5'
10766 5' -56.8 NC_002794.1 + 192129 0.68 0.801263
Target:  5'- -cUGCUGCUGCUGuugcugcugcCGGCGcgguCGCgGCGGa -3'
miRNA:   3'- aaAUGACGGCGAU----------GCCGCu---GCG-CGUC- -5'
10766 5' -56.8 NC_002794.1 + 101796 0.68 0.809168
Target:  5'- -gUGCUgcGCCGCUgguuggcGCaGCGGCGCGCc- -3'
miRNA:   3'- aaAUGA--CGGCGA-------UGcCGCUGCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 100724 0.68 0.810039
Target:  5'- --gACUGgCGCUACcuGCuGACGCGCGc -3'
miRNA:   3'- aaaUGACgGCGAUGc-CG-CUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 257 0.68 0.810039
Target:  5'- --gACUGCCGCc---GCG-CGCGCGGa -3'
miRNA:   3'- aaaUGACGGCGaugcCGCuGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 129927 0.68 0.810039
Target:  5'- --cGCcagGCCGUggcgACGGCGGCG-GCGGc -3'
miRNA:   3'- aaaUGa--CGGCGa---UGCCGCUGCgCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.