miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10766 5' -56.8 NC_002794.1 + 71302 0.66 0.900954
Target:  5'- --cGCcgGCgCGCUcggGCGGCGAgCGCGCc- -3'
miRNA:   3'- aaaUGa-CG-GCGA---UGCCGCU-GCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 181167 0.66 0.900954
Target:  5'- -----cGCCGCgccgACGGCGaACG-GCGGa -3'
miRNA:   3'- aaaugaCGGCGa---UGCCGC-UGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 91751 0.66 0.900954
Target:  5'- --aGgUGCCgGCggGCGGCacCGCGCAGg -3'
miRNA:   3'- aaaUgACGG-CGa-UGCCGcuGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 32872 0.66 0.894527
Target:  5'- --gGCggGCgGCgGCGGCGGCG-GCGGc -3'
miRNA:   3'- aaaUGa-CGgCGaUGCCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 59290 0.66 0.894527
Target:  5'- --cGCUcGCCGCU-CGaCGcCGCGCAGc -3'
miRNA:   3'- aaaUGA-CGGCGAuGCcGCuGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 122455 0.66 0.894527
Target:  5'- --gGCUGCUggGCU-CGGUGAaCGCGCu- -3'
miRNA:   3'- aaaUGACGG--CGAuGCCGCU-GCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 107168 0.66 0.894527
Target:  5'- --gGCcGCCGCUacGCGGCGGagccgGCGCc- -3'
miRNA:   3'- aaaUGaCGGCGA--UGCCGCUg----CGCGuc -5'
10766 5' -56.8 NC_002794.1 + 102620 0.66 0.890563
Target:  5'- ---cCUGCCGCaccugGCggucauccgccggcuGGCGGCGCGCu- -3'
miRNA:   3'- aaauGACGGCGa----UG---------------CCGCUGCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 108164 0.66 0.887875
Target:  5'- --cGCcGgCGCgaagACGccGCGACGCGCGGa -3'
miRNA:   3'- aaaUGaCgGCGa---UGC--CGCUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 187494 0.66 0.887875
Target:  5'- --gACgagGCCGCgcagGCGGCcagGGCGCccGCGGa -3'
miRNA:   3'- aaaUGa--CGGCGa---UGCCG---CUGCG--CGUC- -5'
10766 5' -56.8 NC_002794.1 + 80515 0.66 0.887875
Target:  5'- -cUGC-GCCGCgGCGcGCGACGCcugGCAc -3'
miRNA:   3'- aaAUGaCGGCGaUGC-CGCUGCG---CGUc -5'
10766 5' -56.8 NC_002794.1 + 57509 0.66 0.887875
Target:  5'- -----cGCCGcCUACGGCGAguuCGUGCu- -3'
miRNA:   3'- aaaugaCGGC-GAUGCCGCU---GCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 100096 0.66 0.887875
Target:  5'- -----cGuCCGCgUGCGGCG-CGUGCAGc -3'
miRNA:   3'- aaaugaC-GGCG-AUGCCGCuGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 106250 0.66 0.881001
Target:  5'- --gACcGCCGCgaacCGGCGAgcgcCGCGCGu -3'
miRNA:   3'- aaaUGaCGGCGau--GCCGCU----GCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 125744 0.66 0.881001
Target:  5'- --gGCggGCCGCgggACGGCGGcCG-GCGGc -3'
miRNA:   3'- aaaUGa-CGGCGa--UGCCGCU-GCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 90465 0.66 0.881001
Target:  5'- --gGCgagGCCGCgcGCGGCGGggccgccguccCGCGCGa -3'
miRNA:   3'- aaaUGa--CGGCGa-UGCCGCU-----------GCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 103806 0.66 0.881001
Target:  5'- -gUGC-GCCuGCgACGGCGGCGCcgacguggagucGCAGg -3'
miRNA:   3'- aaAUGaCGG-CGaUGCCGCUGCG------------CGUC- -5'
10766 5' -56.8 NC_002794.1 + 101112 0.66 0.881001
Target:  5'- -cUACgagGCCGCcGCcGUGGCGCGCc- -3'
miRNA:   3'- aaAUGa--CGGCGaUGcCGCUGCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 54980 0.66 0.881001
Target:  5'- --cACgacCCGCcGCGGCGACG-GCGGc -3'
miRNA:   3'- aaaUGac-GGCGaUGCCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 183196 0.66 0.881001
Target:  5'- --cGC-GCCGCcacgcCGGCGGCGCGUu- -3'
miRNA:   3'- aaaUGaCGGCGau---GCCGCUGCGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.