miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10766 5' -56.8 NC_002794.1 + 70073 0.66 0.880302
Target:  5'- --cGCaGCCGCaGCaaGGCGAcgcaggcCGCGCAGa -3'
miRNA:   3'- aaaUGaCGGCGaUG--CCGCU-------GCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 152803 0.66 0.880302
Target:  5'- --aGCUGCUGCUcccgaucGgGGUGcCGUGCGGa -3'
miRNA:   3'- aaaUGACGGCGA-------UgCCGCuGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 55302 0.67 0.873911
Target:  5'- --gGCgGCgGCgucGCGGCGG-GCGCGGg -3'
miRNA:   3'- aaaUGaCGgCGa--UGCCGCUgCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 149974 0.67 0.873911
Target:  5'- ---cCUGCCGCggacCGGCGGC-CGCu- -3'
miRNA:   3'- aaauGACGGCGau--GCCGCUGcGCGuc -5'
10766 5' -56.8 NC_002794.1 + 95846 0.67 0.873911
Target:  5'- --gGCgGCCGggGaGGCGGCGgGCGGg -3'
miRNA:   3'- aaaUGaCGGCgaUgCCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 192025 0.67 0.873911
Target:  5'- --gGCUGCUGUUucugUGGCGGCG-GCGGc -3'
miRNA:   3'- aaaUGACGGCGAu---GCCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 153406 0.67 0.873911
Target:  5'- --aGCUGUCGCga-GcGCcGCGCGCGGa -3'
miRNA:   3'- aaaUGACGGCGaugC-CGcUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 127599 0.67 0.873911
Target:  5'- -cUGCgcgGCCGCUGa-GCGGCGCGgAc -3'
miRNA:   3'- aaAUGa--CGGCGAUgcCGCUGCGCgUc -5'
10766 5' -56.8 NC_002794.1 + 126383 0.67 0.873911
Target:  5'- --gGCgccgggGCCuGC-GCGGCGGCGUGCGc -3'
miRNA:   3'- aaaUGa-----CGG-CGaUGCCGCUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 120061 0.67 0.866607
Target:  5'- --gGCgGCCGCggaGGcCGACGCgGCGGu -3'
miRNA:   3'- aaaUGaCGGCGaugCC-GCUGCG-CGUC- -5'
10766 5' -56.8 NC_002794.1 + 112838 0.67 0.866607
Target:  5'- -gUACgGCUGCUcguCGGCG-CGcCGCAGc -3'
miRNA:   3'- aaAUGaCGGCGAu--GCCGCuGC-GCGUC- -5'
10766 5' -56.8 NC_002794.1 + 105435 0.67 0.866607
Target:  5'- --cGCcGCCGCgcCGGCGGCGC-CGu -3'
miRNA:   3'- aaaUGaCGGCGauGCCGCUGCGcGUc -5'
10766 5' -56.8 NC_002794.1 + 75374 0.67 0.866607
Target:  5'- -----cGCCGCggcCGGCGGCG-GCGGc -3'
miRNA:   3'- aaaugaCGGCGau-GCCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 10710 0.67 0.866607
Target:  5'- -cUACUcgGCgCGCU-CGGaCGACGCGCu- -3'
miRNA:   3'- aaAUGA--CG-GCGAuGCC-GCUGCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 80402 0.67 0.866607
Target:  5'- -cUACUcGCCGCggcccaGGUGGCGCcggGCGGg -3'
miRNA:   3'- aaAUGA-CGGCGaug---CCGCUGCG---CGUC- -5'
10766 5' -56.8 NC_002794.1 + 14488 0.67 0.866607
Target:  5'- --cGCUGuUCGCgGCGGCGGCccGCGCu- -3'
miRNA:   3'- aaaUGAC-GGCGaUGCCGCUG--CGCGuc -5'
10766 5' -56.8 NC_002794.1 + 70239 0.67 0.866607
Target:  5'- --gGCcgGCCGCcccGCaGCaGACGCGCAGc -3'
miRNA:   3'- aaaUGa-CGGCGa--UGcCG-CUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 118683 0.67 0.859097
Target:  5'- --gGCcGCCGCcgGCGGCaGCGCcCAGg -3'
miRNA:   3'- aaaUGaCGGCGa-UGCCGcUGCGcGUC- -5'
10766 5' -56.8 NC_002794.1 + 62077 0.67 0.859097
Target:  5'- --cGCcgGCgGCgacgACGGCGACGCgGCGc -3'
miRNA:   3'- aaaUGa-CGgCGa---UGCCGCUGCG-CGUc -5'
10766 5' -56.8 NC_002794.1 + 103917 0.67 0.859097
Target:  5'- -----cGCCGCgcaacGCGGCGagcaGCGCGCGu -3'
miRNA:   3'- aaaugaCGGCGa----UGCCGC----UGCGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.