miRNA display CGI


Results 61 - 80 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10766 5' -56.8 NC_002794.1 + 118683 0.67 0.859097
Target:  5'- --gGCcGCCGCcgGCGGCaGCGCcCAGg -3'
miRNA:   3'- aaaUGaCGGCGa-UGCCGcUGCGcGUC- -5'
10766 5' -56.8 NC_002794.1 + 176528 0.67 0.859097
Target:  5'- --aGCgUGUCGCaucggucccuUugGGCGACGCgGCGGu -3'
miRNA:   3'- aaaUG-ACGGCG----------AugCCGCUGCG-CGUC- -5'
10766 5' -56.8 NC_002794.1 + 114440 0.67 0.851385
Target:  5'- --aGCUGCCGC-ACGuCGugGUGCu- -3'
miRNA:   3'- aaaUGACGGCGaUGCcGCugCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 63449 0.67 0.851385
Target:  5'- --cACgGCCGCgGCGGCGACGaugacgacgagGCGGc -3'
miRNA:   3'- aaaUGaCGGCGaUGCCGCUGCg----------CGUC- -5'
10766 5' -56.8 NC_002794.1 + 185569 0.67 0.851385
Target:  5'- ---cCUGCCGCgGCaG-GGCGCGCGGc -3'
miRNA:   3'- aaauGACGGCGaUGcCgCUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 194926 0.67 0.851385
Target:  5'- --aGCgGCCGCaccagcuccgACGGCGACGUcgucaGCAGc -3'
miRNA:   3'- aaaUGaCGGCGa---------UGCCGCUGCG-----CGUC- -5'
10766 5' -56.8 NC_002794.1 + 143113 0.67 0.851385
Target:  5'- --aGCc-CCGCU-CGGcCGugGCGCAGg -3'
miRNA:   3'- aaaUGacGGCGAuGCC-GCugCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 148528 0.67 0.848246
Target:  5'- -cUGC-GCCGCUucccgugccucguCGGCuGCGCGCGGc -3'
miRNA:   3'- aaAUGaCGGCGAu------------GCCGcUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 32036 0.67 0.843479
Target:  5'- --cGCUGCCGaUACaGCGGCGUGUc- -3'
miRNA:   3'- aaaUGACGGCgAUGcCGCUGCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 109388 0.67 0.843479
Target:  5'- -cUGCUGCgGaUGCuGGCGAuCGCGCGa -3'
miRNA:   3'- aaAUGACGgCgAUG-CCGCU-GCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 78979 0.67 0.835384
Target:  5'- --cACUGCUGCUGCGGCcGCucccggaguCGCGGc -3'
miRNA:   3'- aaaUGACGGCGAUGCCGcUGc--------GCGUC- -5'
10766 5' -56.8 NC_002794.1 + 118266 0.67 0.835384
Target:  5'- -----gGCCGggGCGGCGGCGC-CGGc -3'
miRNA:   3'- aaaugaCGGCgaUGCCGCUGCGcGUC- -5'
10766 5' -56.8 NC_002794.1 + 178330 0.67 0.835384
Target:  5'- -gUAgaGCCGCUcUGGUGAcCGCGUGGc -3'
miRNA:   3'- aaAUgaCGGCGAuGCCGCU-GCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 61144 0.67 0.835384
Target:  5'- -cUGCUGCCGCccgACccCGAgCGCGCGGu -3'
miRNA:   3'- aaAUGACGGCGa--UGccGCU-GCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 117703 0.67 0.835384
Target:  5'- -----cGCCGCgACGGCGugGCaGCu- -3'
miRNA:   3'- aaaugaCGGCGaUGCCGCugCG-CGuc -5'
10766 5' -56.8 NC_002794.1 + 188334 0.68 0.827107
Target:  5'- --cGCcGCCGCcgGCGGCGccguCGCGCc- -3'
miRNA:   3'- aaaUGaCGGCGa-UGCCGCu---GCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 117431 0.68 0.827107
Target:  5'- --aGCUGCCGCgagGCGuuGCGgAUGuCGCGGa -3'
miRNA:   3'- aaaUGACGGCGa--UGC--CGC-UGC-GCGUC- -5'
10766 5' -56.8 NC_002794.1 + 105905 0.68 0.827107
Target:  5'- -----cGCCGCgGCGGCGGCGCu--- -3'
miRNA:   3'- aaaugaCGGCGaUGCCGCUGCGcguc -5'
10766 5' -56.8 NC_002794.1 + 61554 0.68 0.827107
Target:  5'- --cGCcGCCGCgGCGGCGGC-CGCc- -3'
miRNA:   3'- aaaUGaCGGCGaUGCCGCUGcGCGuc -5'
10766 5' -56.8 NC_002794.1 + 47409 0.68 0.827107
Target:  5'- -----aGCCGCcguCGGCGccguCGCGCGGa -3'
miRNA:   3'- aaaugaCGGCGau-GCCGCu---GCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.