miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10766 5' -56.8 NC_002794.1 + 257 0.68 0.810039
Target:  5'- --gACUGCCGCc---GCG-CGCGCGGa -3'
miRNA:   3'- aaaUGACGGCGaugcCGCuGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 10710 0.67 0.866607
Target:  5'- -cUACUcgGCgCGCU-CGGaCGACGCGCu- -3'
miRNA:   3'- aaAUGA--CG-GCGAuGCC-GCUGCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 13126 0.66 0.900954
Target:  5'- -----cGCCGC-GCGGCucgcuCGCGCGGg -3'
miRNA:   3'- aaaugaCGGCGaUGCCGcu---GCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 13277 0.68 0.792337
Target:  5'- --aGCgGCCGCUguugACGGCGGCauggGCGCu- -3'
miRNA:   3'- aaaUGaCGGCGA----UGCCGCUG----CGCGuc -5'
10766 5' -56.8 NC_002794.1 + 14488 0.67 0.866607
Target:  5'- --cGCUGuUCGCgGCGGCGGCccGCGCu- -3'
miRNA:   3'- aaaUGAC-GGCGaUGCCGCUG--CGCGuc -5'
10766 5' -56.8 NC_002794.1 + 14526 0.7 0.730278
Target:  5'- --gGC-GCCGCUcggccACGGCGcucucgcccccgucgACGCGCGGg -3'
miRNA:   3'- aaaUGaCGGCGA-----UGCCGC---------------UGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 18681 0.71 0.622035
Target:  5'- --gGCUGCCGCcgccgucuccggcACGGCGGCG-GCGGu -3'
miRNA:   3'- aaaUGACGGCGa------------UGCCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 19837 0.7 0.706675
Target:  5'- -cUGCUGCacgGCUACGGgGACuGCGUg- -3'
miRNA:   3'- aaAUGACGg--CGAUGCCgCUG-CGCGuc -5'
10766 5' -56.8 NC_002794.1 + 20454 0.66 0.91312
Target:  5'- -cUGgaGCCGCcucUGCGGCcccgaaGACGUGCAc -3'
miRNA:   3'- aaAUgaCGGCG---AUGCCG------CUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 32036 0.67 0.843479
Target:  5'- --cGCUGCCGaUACaGCGGCGUGUc- -3'
miRNA:   3'- aaaUGACGGCgAUGcCGCUGCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 32296 0.72 0.585645
Target:  5'- --cGCcGCCGCcGCGGCGGcCGCGCc- -3'
miRNA:   3'- aaaUGaCGGCGaUGCCGCU-GCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 32872 0.66 0.894527
Target:  5'- --gGCggGCgGCgGCGGCGGCG-GCGGc -3'
miRNA:   3'- aaaUGa-CGgCGaUGCCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 33583 0.69 0.774069
Target:  5'- -gUGgUGgaCCGcCUGCGGCgGACGCGCAu -3'
miRNA:   3'- aaAUgAC--GGC-GAUGCCG-CUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 34252 0.79 0.24179
Target:  5'- --gGCUGCCGCcGCaGGCGgaccGCGCGCAGg -3'
miRNA:   3'- aaaUGACGGCGaUG-CCGC----UGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 34736 0.7 0.71656
Target:  5'- --gGCgGCCGCagaGCGcGCGACgGCGCGGu -3'
miRNA:   3'- aaaUGaCGGCGa--UGC-CGCUG-CGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 36950 0.66 0.91312
Target:  5'- --cGC-GUCGC-GCGGCGGCaggcagucGCGCAGg -3'
miRNA:   3'- aaaUGaCGGCGaUGCCGCUG--------CGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 37255 0.66 0.900954
Target:  5'- --cGCUcUCGCUcuccguCGGCgGGCGCGCGGg -3'
miRNA:   3'- aaaUGAcGGCGAu-----GCCG-CUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 37737 0.76 0.39808
Target:  5'- --gGCggcGCCGCcgGCGGCGGCGCGgCGGc -3'
miRNA:   3'- aaaUGa--CGGCGa-UGCCGCUGCGC-GUC- -5'
10766 5' -56.8 NC_002794.1 + 37817 0.7 0.726374
Target:  5'- --cGCUcccGCCGUcACGGCGACG-GCGGc -3'
miRNA:   3'- aaaUGA---CGGCGaUGCCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 40500 0.68 0.818656
Target:  5'- --cGCUcGCCGCUcgagucACGGCcgccGACGCGCc- -3'
miRNA:   3'- aaaUGA-CGGCGA------UGCCG----CUGCGCGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.