miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10766 5' -56.8 NC_002794.1 + 42219 0.66 0.905317
Target:  5'- ---uCUGCCGCUggaucagccgcgagACGGCGGCGaCGa-- -3'
miRNA:   3'- aaauGACGGCGA--------------UGCCGCUGC-GCguc -5'
10766 5' -56.8 NC_002794.1 + 44705 0.66 0.907152
Target:  5'- --cGCccgGCCGCgaccGCGGCGACGU-CGGc -3'
miRNA:   3'- aaaUGa--CGGCGa---UGCCGCUGCGcGUC- -5'
10766 5' -56.8 NC_002794.1 + 45291 0.67 0.859097
Target:  5'- --gACUGUaCGa---GGCGACGUGCAGa -3'
miRNA:   3'- aaaUGACG-GCgaugCCGCUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 47409 0.68 0.827107
Target:  5'- -----aGCCGCcguCGGCGccguCGCGCGGa -3'
miRNA:   3'- aaaugaCGGCGau-GCCGCu---GCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 47756 0.7 0.686728
Target:  5'- --gGCgGCCGUggucGCGGCacaACGCGCAGg -3'
miRNA:   3'- aaaUGaCGGCGa---UGCCGc--UGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 49412 0.72 0.602795
Target:  5'- --gGCgGCCGCggcgGCGGCGGCcgucacggcguccgGCGCGGu -3'
miRNA:   3'- aaaUGaCGGCGa---UGCCGCUG--------------CGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 53250 0.66 0.91312
Target:  5'- -----cGCCGCgcCGGCGucgcCGCGCGa -3'
miRNA:   3'- aaaugaCGGCGauGCCGCu---GCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 53758 0.68 0.792337
Target:  5'- --cGCcGCCGCUGcCGGCGGCGgGaCGc -3'
miRNA:   3'- aaaUGaCGGCGAU-GCCGCUGCgC-GUc -5'
10766 5' -56.8 NC_002794.1 + 54627 0.69 0.774069
Target:  5'- gUUACUGuuGCacACcGCGGCGgGCAGa -3'
miRNA:   3'- aAAUGACggCGa-UGcCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 54980 0.66 0.881001
Target:  5'- --cACgacCCGCcGCGGCGACG-GCGGc -3'
miRNA:   3'- aaaUGac-GGCGaUGCCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 55302 0.67 0.873911
Target:  5'- --gGCgGCgGCgucGCGGCGG-GCGCGGg -3'
miRNA:   3'- aaaUGaCGgCGa--UGCCGCUgCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 56323 0.7 0.726374
Target:  5'- --gGCgGCCGUggcCGGCGACGCgGCGa -3'
miRNA:   3'- aaaUGaCGGCGau-GCCGCUGCG-CGUc -5'
10766 5' -56.8 NC_002794.1 + 57509 0.66 0.887875
Target:  5'- -----cGCCGcCUACGGCGAguuCGUGCu- -3'
miRNA:   3'- aaaugaCGGC-GAUGCCGCU---GCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 58662 0.66 0.900954
Target:  5'- --gGCUGCUGCagcCGGCcgugcACGCGCAc -3'
miRNA:   3'- aaaUGACGGCGau-GCCGc----UGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 58834 0.71 0.62609
Target:  5'- ---cCUGCCGCgcgaggACGcCGACGUGCAGc -3'
miRNA:   3'- aaauGACGGCGa-----UGCcGCUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 59182 0.71 0.646369
Target:  5'- -cUGCUGgaccCCGUgGCGGuCGACGCGCAc -3'
miRNA:   3'- aaAUGAC----GGCGaUGCC-GCUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 59248 0.69 0.774069
Target:  5'- -cUGCUGCC-CUAcguCGGCGAgcaCGCGCGc -3'
miRNA:   3'- aaAUGACGGcGAU---GCCGCU---GCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 59290 0.66 0.894527
Target:  5'- --cGCUcGCCGCU-CGaCGcCGCGCAGc -3'
miRNA:   3'- aaaUGA-CGGCGAuGCcGCuGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 59362 0.72 0.615954
Target:  5'- --gGCUGCUGCgccaccACGGCGcCGCGCc- -3'
miRNA:   3'- aaaUGACGGCGa-----UGCCGCuGCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 61144 0.67 0.835384
Target:  5'- -cUGCUGCCGCccgACccCGAgCGCGCGGu -3'
miRNA:   3'- aaAUGACGGCGa--UGccGCU-GCGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.