miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10766 5' -56.8 NC_002794.1 + 61554 0.68 0.827107
Target:  5'- --cGCcGCCGCgGCGGCGGC-CGCc- -3'
miRNA:   3'- aaaUGaCGGCGaUGCCGCUGcGCGuc -5'
10766 5' -56.8 NC_002794.1 + 61888 0.7 0.696728
Target:  5'- --gGC-GCCGC-GCGGCGA-GCGCGGc -3'
miRNA:   3'- aaaUGaCGGCGaUGCCGCUgCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 62077 0.67 0.859097
Target:  5'- --cGCcgGCgGCgacgACGGCGACGCgGCGc -3'
miRNA:   3'- aaaUGa-CGgCGa---UGCCGCUGCG-CGUc -5'
10766 5' -56.8 NC_002794.1 + 62291 0.76 0.373332
Target:  5'- -cUGCUGCCGCUcCGaGCccGCGCGCAGa -3'
miRNA:   3'- aaAUGACGGCGAuGC-CGc-UGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 63449 0.67 0.851385
Target:  5'- --cACgGCCGCgGCGGCGACGaugacgacgagGCGGc -3'
miRNA:   3'- aaaUGaCGGCGaUGCCGCUGCg----------CGUC- -5'
10766 5' -56.8 NC_002794.1 + 64807 0.66 0.91312
Target:  5'- --aGCgacGCCGCggACGGCGGCGaGCc- -3'
miRNA:   3'- aaaUGa--CGGCGa-UGCCGCUGCgCGuc -5'
10766 5' -56.8 NC_002794.1 + 66733 0.71 0.636231
Target:  5'- --cACcGCCgGCggugGCGGCGGCGCGUAc -3'
miRNA:   3'- aaaUGaCGG-CGa---UGCCGCUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 69729 0.68 0.819509
Target:  5'- --gAgUGCCGCcggagcgccacggcCGGCGACGcCGCGGg -3'
miRNA:   3'- aaaUgACGGCGau------------GCCGCUGC-GCGUC- -5'
10766 5' -56.8 NC_002794.1 + 70073 0.66 0.880302
Target:  5'- --cGCaGCCGCaGCaaGGCGAcgcaggcCGCGCAGa -3'
miRNA:   3'- aaaUGaCGGCGaUG--CCGCU-------GCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 70239 0.67 0.866607
Target:  5'- --gGCcgGCCGCcccGCaGCaGACGCGCAGc -3'
miRNA:   3'- aaaUGa-CGGCGa--UGcCG-CUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 71302 0.66 0.900954
Target:  5'- --cGCcgGCgCGCUcggGCGGCGAgCGCGCc- -3'
miRNA:   3'- aaaUGa-CG-GCGA---UGCCGCU-GCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 73276 0.71 0.646369
Target:  5'- -----cGCCGaCcGCGGCGACGCGCc- -3'
miRNA:   3'- aaaugaCGGC-GaUGCCGCUGCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 73312 0.69 0.755302
Target:  5'- ------aCCGCgACGGCGACGCGUAc -3'
miRNA:   3'- aaaugacGGCGaUGCCGCUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 75374 0.67 0.866607
Target:  5'- -----cGCCGCggcCGGCGGCG-GCGGc -3'
miRNA:   3'- aaaugaCGGCGau-GCCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 76829 0.66 0.907152
Target:  5'- -----cGCCaGCggcCGGCGAUGCGCGc -3'
miRNA:   3'- aaaugaCGG-CGau-GCCGCUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 78979 0.67 0.835384
Target:  5'- --cACUGCUGCUGCGGCcGCucccggaguCGCGGc -3'
miRNA:   3'- aaaUGACGGCGAUGCCGcUGc--------GCGUC- -5'
10766 5' -56.8 NC_002794.1 + 79436 0.71 0.636231
Target:  5'- --gGCgGCgGCgGCGGCGACcgGCGCGGa -3'
miRNA:   3'- aaaUGaCGgCGaUGCCGCUG--CGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 80402 0.67 0.866607
Target:  5'- -cUACUcGCCGCggcccaGGUGGCGCcggGCGGg -3'
miRNA:   3'- aaAUGA-CGGCGaug---CCGCUGCG---CGUC- -5'
10766 5' -56.8 NC_002794.1 + 80515 0.66 0.887875
Target:  5'- -cUGC-GCCGCgGCGcGCGACGCcugGCAc -3'
miRNA:   3'- aaAUGaCGGCGaUGC-CGCUGCG---CGUc -5'
10766 5' -56.8 NC_002794.1 + 82955 0.66 0.907152
Target:  5'- -----cGCCGCgcACGGCGcgcacGCGaCGCAGg -3'
miRNA:   3'- aaaugaCGGCGa-UGCCGC-----UGC-GCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.