miRNA display CGI


Results 1 - 20 of 151 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10766 5' -56.8 NC_002794.1 + 194926 0.67 0.851385
Target:  5'- --aGCgGCCGCaccagcuccgACGGCGACGUcgucaGCAGc -3'
miRNA:   3'- aaaUGaCGGCGa---------UGCCGCUGCG-----CGUC- -5'
10766 5' -56.8 NC_002794.1 + 192129 0.68 0.801263
Target:  5'- -cUGCUGCUGCUGuugcugcugcCGGCGcgguCGCgGCGGa -3'
miRNA:   3'- aaAUGACGGCGAU----------GCCGCu---GCG-CGUC- -5'
10766 5' -56.8 NC_002794.1 + 192025 0.67 0.873911
Target:  5'- --gGCUGCUGUUucugUGGCGGCG-GCGGc -3'
miRNA:   3'- aaaUGACGGCGAu---GCCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 188334 0.68 0.827107
Target:  5'- --cGCcGCCGCcgGCGGCGccguCGCGCc- -3'
miRNA:   3'- aaaUGaCGGCGa-UGCCGCu---GCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 187494 0.66 0.887875
Target:  5'- --gACgagGCCGCgcagGCGGCcagGGCGCccGCGGa -3'
miRNA:   3'- aaaUGa--CGGCGa---UGCCG---CUGCG--CGUC- -5'
10766 5' -56.8 NC_002794.1 + 187454 0.7 0.675677
Target:  5'- -cUGCcGCCGCU-CGGCGucgcucgGCGCGCGc -3'
miRNA:   3'- aaAUGaCGGCGAuGCCGC-------UGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 185569 0.67 0.851385
Target:  5'- ---cCUGCCGCgGCaG-GGCGCGCGGc -3'
miRNA:   3'- aaauGACGGCGaUGcCgCUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 185469 0.71 0.656496
Target:  5'- -----cGCCGCggGCGGCGGC-CGCGGc -3'
miRNA:   3'- aaaugaCGGCGa-UGCCGCUGcGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 184573 0.75 0.415153
Target:  5'- --cGCcGCCGCggcgGCGGCGgccACGCGCGGc -3'
miRNA:   3'- aaaUGaCGGCGa---UGCCGC---UGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 184457 0.77 0.349649
Target:  5'- --cGCUGCCGCccGCGGgccgcgcgaaCGGCGCGCGGg -3'
miRNA:   3'- aaaUGACGGCGa-UGCC----------GCUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 184021 0.72 0.575599
Target:  5'- --cGCcgGCCGCcACGGCaccGCGCGCAGc -3'
miRNA:   3'- aaaUGa-CGGCGaUGCCGc--UGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 183196 0.66 0.881001
Target:  5'- --cGC-GCCGCcacgcCGGCGGCGCGUu- -3'
miRNA:   3'- aaaUGaCGGCGau---GCCGCUGCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 181876 0.68 0.827107
Target:  5'- --cGCUGCCccggggucGCgaacaGGCGACaGCGCGGg -3'
miRNA:   3'- aaaUGACGG--------CGaug--CCGCUG-CGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 181167 0.66 0.900954
Target:  5'- -----cGCCGCgccgACGGCGaACG-GCGGa -3'
miRNA:   3'- aaaugaCGGCGa---UGCCGC-UGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 180062 0.68 0.810039
Target:  5'- --cACUGgCGCUcagagucaaGCGGCGGacgguaucggUGCGCAGg -3'
miRNA:   3'- aaaUGACgGCGA---------UGCCGCU----------GCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 178330 0.67 0.835384
Target:  5'- -gUAgaGCCGCUcUGGUGAcCGCGUGGc -3'
miRNA:   3'- aaAUgaCGGCGAuGCCGCU-GCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 176528 0.67 0.859097
Target:  5'- --aGCgUGUCGCaucggucccuUugGGCGACGCgGCGGu -3'
miRNA:   3'- aaaUG-ACGGCG----------AugCCGCUGCG-CGUC- -5'
10766 5' -56.8 NC_002794.1 + 157668 0.66 0.91312
Target:  5'- --cGCUgGCgGCUugGGCcgcuuGGCGUGCAc -3'
miRNA:   3'- aaaUGA-CGgCGAugCCG-----CUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 154374 0.73 0.535871
Target:  5'- -----gGCCGCgGCGGCGGCGgGCAc -3'
miRNA:   3'- aaaugaCGGCGaUGCCGCUGCgCGUc -5'
10766 5' -56.8 NC_002794.1 + 153406 0.67 0.873911
Target:  5'- --aGCUGUCGCga-GcGCcGCGCGCGGa -3'
miRNA:   3'- aaaUGACGGCGaugC-CGcUGCGCGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.