miRNA display CGI


Results 21 - 40 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10766 5' -56.8 NC_002794.1 + 152803 0.66 0.880302
Target:  5'- --aGCUGCUGCUcccgaucGgGGUGcCGUGCGGa -3'
miRNA:   3'- aaaUGACGGCGA-------UgCCGCuGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 152355 0.66 0.907152
Target:  5'- -cUACgGCCGCUuggaacggauCGGCGACaCGCuGg -3'
miRNA:   3'- aaAUGaCGGCGAu---------GCCGCUGcGCGuC- -5'
10766 5' -56.8 NC_002794.1 + 151561 0.71 0.624063
Target:  5'- gUUGCUGCUGaCguagcgcccccCGGCGGCGCGCGc -3'
miRNA:   3'- aAAUGACGGC-Gau---------GCCGCUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 150218 0.76 0.357423
Target:  5'- -cUGCUGCCgaGCUGCGuGCGACG-GCAGc -3'
miRNA:   3'- aaAUGACGG--CGAUGC-CGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 149974 0.67 0.873911
Target:  5'- ---cCUGCCGCggacCGGCGGC-CGCu- -3'
miRNA:   3'- aaauGACGGCGau--GCCGCUGcGCGuc -5'
10766 5' -56.8 NC_002794.1 + 148528 0.67 0.848246
Target:  5'- -cUGC-GCCGCUucccgugccucguCGGCuGCGCGCGGc -3'
miRNA:   3'- aaAUGaCGGCGAu------------GCCGcUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 148102 0.68 0.810039
Target:  5'- --aGCUGCCGCUcaagaagcgACGGUcggugucgGGCGCGgGGc -3'
miRNA:   3'- aaaUGACGGCGA---------UGCCG--------CUGCGCgUC- -5'
10766 5' -56.8 NC_002794.1 + 147431 0.71 0.646369
Target:  5'- --cGCUGCUGCUggACGGCuacgGGCGCGUg- -3'
miRNA:   3'- aaaUGACGGCGA--UGCCG----CUGCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 145813 0.69 0.78327
Target:  5'- --cGCcGCCGCcgGCGGCGAgccgaGCGCGu -3'
miRNA:   3'- aaaUGaCGGCGa-UGCCGCUg----CGCGUc -5'
10766 5' -56.8 NC_002794.1 + 145386 0.7 0.706675
Target:  5'- --cGCU-CCGCU-CGGUGGCGCGCc- -3'
miRNA:   3'- aaaUGAcGGCGAuGCCGCUGCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 143113 0.67 0.851385
Target:  5'- --aGCc-CCGCU-CGGcCGugGCGCAGg -3'
miRNA:   3'- aaaUGacGGCGAuGCC-GCugCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 142306 0.66 0.900954
Target:  5'- -gUACagGUgGCggagGCGGCGGCGCagGCGGc -3'
miRNA:   3'- aaAUGa-CGgCGa---UGCCGCUGCG--CGUC- -5'
10766 5' -56.8 NC_002794.1 + 139911 0.66 0.911354
Target:  5'- --cGCagGCCGUcggACGGCacgcagcugucguuGACGUGCAGg -3'
miRNA:   3'- aaaUGa-CGGCGa--UGCCG--------------CUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 138436 0.68 0.801263
Target:  5'- -----aGCCGCggugGCGGCGGCGCcuCGGc -3'
miRNA:   3'- aaaugaCGGCGa---UGCCGCUGCGc-GUC- -5'
10766 5' -56.8 NC_002794.1 + 133739 0.66 0.907152
Target:  5'- -cUGCUGCCGUU-CGGUcGCcUGCAGg -3'
miRNA:   3'- aaAUGACGGCGAuGCCGcUGcGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 129927 0.68 0.810039
Target:  5'- --cGCcagGCCGUggcgACGGCGGCG-GCGGc -3'
miRNA:   3'- aaaUGa--CGGCGa---UGCCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 129512 0.71 0.646369
Target:  5'- -----cGCCGCcGCGGuCGGCGCGCuGa -3'
miRNA:   3'- aaaugaCGGCGaUGCC-GCUGCGCGuC- -5'
10766 5' -56.8 NC_002794.1 + 127599 0.67 0.873911
Target:  5'- -cUGCgcgGCCGCUGa-GCGGCGCGgAc -3'
miRNA:   3'- aaAUGa--CGGCGAUgcCGCUGCGCgUc -5'
10766 5' -56.8 NC_002794.1 + 127343 0.75 0.432667
Target:  5'- --cGCUGCCgagacGCUcGCGGCGGCGgCGCGGc -3'
miRNA:   3'- aaaUGACGG-----CGA-UGCCGCUGC-GCGUC- -5'
10766 5' -56.8 NC_002794.1 + 126383 0.67 0.873911
Target:  5'- --gGCgccgggGCCuGC-GCGGCGGCGUGCGc -3'
miRNA:   3'- aaaUGa-----CGG-CGaUGCCGCUGCGCGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.