miRNA display CGI


Results 41 - 60 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10766 5' -56.8 NC_002794.1 + 139911 0.66 0.911354
Target:  5'- --cGCagGCCGUcggACGGCacgcagcugucguuGACGUGCAGg -3'
miRNA:   3'- aaaUGa-CGGCGa--UGCCG--------------CUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 20454 0.66 0.91312
Target:  5'- -cUGgaGCCGCcucUGCGGCcccgaaGACGUGCAc -3'
miRNA:   3'- aaAUgaCGGCG---AUGCCG------CUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 53250 0.66 0.91312
Target:  5'- -----cGCCGCgcCGGCGucgcCGCGCGa -3'
miRNA:   3'- aaaugaCGGCGauGCCGCu---GCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 36950 0.66 0.91312
Target:  5'- --cGC-GUCGC-GCGGCGGCaggcagucGCGCAGg -3'
miRNA:   3'- aaaUGaCGGCGaUGCCGCUG--------CGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 157668 0.66 0.91312
Target:  5'- --cGCUgGCgGCUugGGCcgcuuGGCGUGCAc -3'
miRNA:   3'- aaaUGA-CGgCGAugCCG-----CUGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 42219 0.66 0.905317
Target:  5'- ---uCUGCCGCUggaucagccgcgagACGGCGGCGaCGa-- -3'
miRNA:   3'- aaauGACGGCGA--------------UGCCGCUGC-GCguc -5'
10766 5' -56.8 NC_002794.1 + 118633 0.66 0.905317
Target:  5'- --aGCUGCUGCgccagcuCGGCGGCcagcucguccguggGCGCGa -3'
miRNA:   3'- aaaUGACGGCGau-----GCCGCUG--------------CGCGUc -5'
10766 5' -56.8 NC_002794.1 + 107168 0.66 0.894527
Target:  5'- --gGCcGCCGCUacGCGGCGGagccgGCGCc- -3'
miRNA:   3'- aaaUGaCGGCGA--UGCCGCUg----CGCGuc -5'
10766 5' -56.8 NC_002794.1 + 102620 0.66 0.890563
Target:  5'- ---cCUGCCGCaccugGCggucauccgccggcuGGCGGCGCGCu- -3'
miRNA:   3'- aaauGACGGCGa----UG---------------CCGCUGCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 100096 0.66 0.887875
Target:  5'- -----cGuCCGCgUGCGGCG-CGUGCAGc -3'
miRNA:   3'- aaaugaC-GGCG-AUGCCGCuGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 142306 0.66 0.900954
Target:  5'- -gUACagGUgGCggagGCGGCGGCGCagGCGGc -3'
miRNA:   3'- aaAUGa-CGgCGa---UGCCGCUGCG--CGUC- -5'
10766 5' -56.8 NC_002794.1 + 122455 0.66 0.894527
Target:  5'- --gGCUGCUggGCU-CGGUGAaCGCGCu- -3'
miRNA:   3'- aaaUGACGG--CGAuGCCGCU-GCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 59290 0.66 0.894527
Target:  5'- --cGCUcGCCGCU-CGaCGcCGCGCAGc -3'
miRNA:   3'- aaaUGA-CGGCGAuGCcGCuGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 32872 0.66 0.894527
Target:  5'- --gGCggGCgGCgGCGGCGGCG-GCGGc -3'
miRNA:   3'- aaaUGa-CGgCGaUGCCGCUGCgCGUC- -5'
10766 5' -56.8 NC_002794.1 + 37255 0.66 0.900954
Target:  5'- --cGCUcUCGCUcuccguCGGCgGGCGCGCGGg -3'
miRNA:   3'- aaaUGAcGGCGAu-----GCCG-CUGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 13126 0.66 0.900954
Target:  5'- -----cGCCGC-GCGGCucgcuCGCGCGGg -3'
miRNA:   3'- aaaugaCGGCGaUGCCGcu---GCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 58662 0.66 0.900954
Target:  5'- --gGCUGCUGCagcCGGCcgugcACGCGCAc -3'
miRNA:   3'- aaaUGACGGCGau-GCCGc----UGCGCGUc -5'
10766 5' -56.8 NC_002794.1 + 71302 0.66 0.900954
Target:  5'- --cGCcgGCgCGCUcggGCGGCGAgCGCGCc- -3'
miRNA:   3'- aaaUGa-CG-GCGA---UGCCGCU-GCGCGuc -5'
10766 5' -56.8 NC_002794.1 + 91751 0.66 0.900954
Target:  5'- --aGgUGCCgGCggGCGGCacCGCGCAGg -3'
miRNA:   3'- aaaUgACGG-CGa-UGCCGcuGCGCGUC- -5'
10766 5' -56.8 NC_002794.1 + 107536 0.66 0.907152
Target:  5'- --gGC-GCgGCgccgGCGGCGACGacCGCGGu -3'
miRNA:   3'- aaaUGaCGgCGa---UGCCGCUGC--GCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.