miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10767 3' -62.6 NC_002794.1 + 187322 0.66 0.714707
Target:  5'- cGCGGGGUuccgcaGCCGgaGCaGCAGCCCg--- -3'
miRNA:   3'- -CGCCUCA------CGGCa-CGcCGUCGGGgacc -5'
10767 3' -62.6 NC_002794.1 + 32567 0.66 0.714707
Target:  5'- cGCGGAuaGUCGcgcGCGGCGGUgCCgGGg -3'
miRNA:   3'- -CGCCUcaCGGCa--CGCCGUCGgGGaCC- -5'
10767 3' -62.6 NC_002794.1 + 139690 0.66 0.714707
Target:  5'- cCGGccGUGCCGgacaGGUAGCCCCa-- -3'
miRNA:   3'- cGCCu-CACGGCacg-CCGUCGGGGacc -5'
10767 3' -62.6 NC_002794.1 + 126400 0.66 0.714707
Target:  5'- gGCGGcGUGCgCG-GCGGUcgcgaucuGGCUgCUGGu -3'
miRNA:   3'- -CGCCuCACG-GCaCGCCG--------UCGGgGACC- -5'
10767 3' -62.6 NC_002794.1 + 121962 0.66 0.705347
Target:  5'- cUGGAGcgcuCCGUGCGGCucGGUCCCg-- -3'
miRNA:   3'- cGCCUCac--GGCACGCCG--UCGGGGacc -5'
10767 3' -62.6 NC_002794.1 + 70668 0.66 0.704408
Target:  5'- cGCGGcG-GCCGccGCGGCGgugacguccugucGCCgCUGGg -3'
miRNA:   3'- -CGCCuCaCGGCa-CGCCGU-------------CGGgGACC- -5'
10767 3' -62.6 NC_002794.1 + 116076 0.66 0.695932
Target:  5'- cGCGGAGcGCuCGgcGCGGCGGUCgucgCCgGGg -3'
miRNA:   3'- -CGCCUCaCG-GCa-CGCCGUCGG----GGaCC- -5'
10767 3' -62.6 NC_002794.1 + 125738 0.66 0.695932
Target:  5'- gGCGGAGgcggGCCGcggGaCGGCGGCCg---- -3'
miRNA:   3'- -CGCCUCa---CGGCa--C-GCCGUCGGggacc -5'
10767 3' -62.6 NC_002794.1 + 186853 0.66 0.68647
Target:  5'- cGCGGGcGcUGCCGUGCaGCAGCagCgGGc -3'
miRNA:   3'- -CGCCU-C-ACGGCACGcCGUCGggGaCC- -5'
10767 3' -62.6 NC_002794.1 + 129688 0.66 0.676968
Target:  5'- cGCGGGGUGCUggacaccauGUGgGGCauccGGCCgguuaacugUCUGGg -3'
miRNA:   3'- -CGCCUCACGG---------CACgCCG----UCGG---------GGACC- -5'
10767 3' -62.6 NC_002794.1 + 105531 0.66 0.676968
Target:  5'- aGCGGAcGUGagauCCG-GCGGCGGCUCg-GGc -3'
miRNA:   3'- -CGCCU-CAC----GGCaCGCCGUCGGGgaCC- -5'
10767 3' -62.6 NC_002794.1 + 114713 0.66 0.676968
Target:  5'- aCGGAcgGCgGcgGCGGCGGCUCCgGGu -3'
miRNA:   3'- cGCCUcaCGgCa-CGCCGUCGGGGaCC- -5'
10767 3' -62.6 NC_002794.1 + 49613 0.66 0.676968
Target:  5'- gGCGG-GcGCCG-GCGGCGccucgcccGCCCCUc- -3'
miRNA:   3'- -CGCCuCaCGGCaCGCCGU--------CGGGGAcc -5'
10767 3' -62.6 NC_002794.1 + 95761 0.66 0.667435
Target:  5'- cGCGGGGcggcgGCCGcGaCGGCGGCCg--GGg -3'
miRNA:   3'- -CGCCUCa----CGGCaC-GCCGUCGGggaCC- -5'
10767 3' -62.6 NC_002794.1 + 110480 0.66 0.667435
Target:  5'- cGgGGGGUagagaGgCG-GUGGCGGCgCCUGGa -3'
miRNA:   3'- -CgCCUCA-----CgGCaCGCCGUCGgGGACC- -5'
10767 3' -62.6 NC_002794.1 + 37330 0.66 0.667435
Target:  5'- aGCGGuGggGCCcggGCGGCagcaggucgGGCCCCaGGu -3'
miRNA:   3'- -CGCCuCa-CGGca-CGCCG---------UCGGGGaCC- -5'
10767 3' -62.6 NC_002794.1 + 63041 0.67 0.657876
Target:  5'- cGCaGGAGgaaccucucaCCGUccaccGCGGCgAGCUCCUGGg -3'
miRNA:   3'- -CG-CCUCac--------GGCA-----CGCCG-UCGGGGACC- -5'
10767 3' -62.6 NC_002794.1 + 98963 0.67 0.648299
Target:  5'- uGCuGGGcGCCGU-CGGCGGCgCCgUGGc -3'
miRNA:   3'- -CGcCUCaCGGCAcGCCGUCG-GGgACC- -5'
10767 3' -62.6 NC_002794.1 + 95017 0.67 0.648299
Target:  5'- aUGGGGcgGCUGUGCGGCAucucGCCggUGGc -3'
miRNA:   3'- cGCCUCa-CGGCACGCCGU----CGGggACC- -5'
10767 3' -62.6 NC_002794.1 + 64484 0.67 0.648299
Target:  5'- cCGGcuUGaaCGUGCaGGcCGGCCCCUGGc -3'
miRNA:   3'- cGCCucACg-GCACG-CC-GUCGGGGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.