miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10768 3' -59.7 NC_002794.1 + 178237 0.66 0.834076
Target:  5'- gGAUGGGACgacgaggccgucgagGGAagcgggcugaccGGAGaCGGGGUCGGUc -3'
miRNA:   3'- gCUGCCCUG---------------CCU------------UCUC-GUCCCGGUCA- -5'
10768 3' -59.7 NC_002794.1 + 86501 0.66 0.830885
Target:  5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3'
miRNA:   3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5'
10768 3' -59.7 NC_002794.1 + 86189 0.66 0.830885
Target:  5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3'
miRNA:   3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5'
10768 3' -59.7 NC_002794.1 + 125737 0.66 0.830885
Target:  5'- aGGCGGaGGCGGGccgcGGGaCGGcGGCCGGc -3'
miRNA:   3'- gCUGCC-CUGCCUu---CUC-GUC-CCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 86333 0.66 0.830885
Target:  5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3'
miRNA:   3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5'
10768 3' -59.7 NC_002794.1 + 86381 0.66 0.830885
Target:  5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3'
miRNA:   3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5'
10768 3' -59.7 NC_002794.1 + 86549 0.66 0.830885
Target:  5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3'
miRNA:   3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5'
10768 3' -59.7 NC_002794.1 + 153518 0.66 0.822793
Target:  5'- cCGGCGcuauuGGuCGGGAGAGguGGGCg--- -3'
miRNA:   3'- -GCUGC-----CCuGCCUUCUCguCCCGguca -5'
10768 3' -59.7 NC_002794.1 + 55279 0.66 0.814541
Target:  5'- gCGGCGGuGGCGGcgacGAGGGCGGcGGCg--- -3'
miRNA:   3'- -GCUGCC-CUGCC----UUCUCGUC-CCGguca -5'
10768 3' -59.7 NC_002794.1 + 8437 0.66 0.814541
Target:  5'- aGAgGGGGCGGGugaaaAGCGGGGaCCuGa -3'
miRNA:   3'- gCUgCCCUGCCUuc---UCGUCCC-GGuCa -5'
10768 3' -59.7 NC_002794.1 + 9740 0.66 0.806137
Target:  5'- --cCGGGugGGuagguGGGGGgGGGGUCAGa -3'
miRNA:   3'- gcuGCCCugCC-----UUCUCgUCCCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 23468 0.66 0.806137
Target:  5'- aCGuCGGGGCGGAGGGGUcu-GCCAu- -3'
miRNA:   3'- -GCuGCCCUGCCUUCUCGuccCGGUca -5'
10768 3' -59.7 NC_002794.1 + 146744 0.66 0.806137
Target:  5'- aCGACGGGccGCGGAucGGGGgAGGGacgaUGGUc -3'
miRNA:   3'- -GCUGCCC--UGCCU--UCUCgUCCCg---GUCA- -5'
10768 3' -59.7 NC_002794.1 + 127918 0.66 0.797589
Target:  5'- cCGAgGGGGCGGGGauuCGGGGCguGUc -3'
miRNA:   3'- -GCUgCCCUGCCUUcucGUCCCGguCA- -5'
10768 3' -59.7 NC_002794.1 + 95015 0.66 0.797589
Target:  5'- uGAUGGGGCGGcuGuGCGGcaucucGCCGGUg -3'
miRNA:   3'- gCUGCCCUGCCuuCuCGUCc-----CGGUCA- -5'
10768 3' -59.7 NC_002794.1 + 95484 0.66 0.797589
Target:  5'- cCGuACGuuGCGGAAcGAGCucGGCCAGUa -3'
miRNA:   3'- -GC-UGCccUGCCUU-CUCGucCCGGUCA- -5'
10768 3' -59.7 NC_002794.1 + 92305 0.66 0.797589
Target:  5'- aGGCGGGGCuGGGcgcgGGcGGCGGGGgcCCGGg -3'
miRNA:   3'- gCUGCCCUG-CCU----UC-UCGUCCC--GGUCa -5'
10768 3' -59.7 NC_002794.1 + 145560 0.66 0.797589
Target:  5'- cCGACcGGuucGCGGAcgagcgccgacGGAGCGGcGGCCGGc -3'
miRNA:   3'- -GCUGcCC---UGCCU-----------UCUCGUC-CCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 78332 0.67 0.788904
Target:  5'- gCGACGGG-CGGAGGcGCcggaaugucGGCCAGc -3'
miRNA:   3'- -GCUGCCCuGCCUUCuCGuc-------CCGGUCa -5'
10768 3' -59.7 NC_002794.1 + 70266 0.67 0.788904
Target:  5'- gCGACGGaggccgcgaaGGCcGGAGAGCAGG-CCGGg -3'
miRNA:   3'- -GCUGCC----------CUGcCUUCUCGUCCcGGUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.