Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10768 | 3' | -59.7 | NC_002794.1 | + | 86501 | 0.66 | 0.830885 |
Target: 5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3' miRNA: 3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 145560 | 0.66 | 0.797589 |
Target: 5'- cCGACcGGuucGCGGAcgagcgccgacGGAGCGGcGGCCGGc -3' miRNA: 3'- -GCUGcCC---UGCCU-----------UCUCGUC-CCGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 92305 | 0.66 | 0.797589 |
Target: 5'- aGGCGGGGCuGGGcgcgGGcGGCGGGGgcCCGGg -3' miRNA: 3'- gCUGCCCUG-CCU----UC-UCGUCCC--GGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 95484 | 0.66 | 0.797589 |
Target: 5'- cCGuACGuuGCGGAAcGAGCucGGCCAGUa -3' miRNA: 3'- -GC-UGCccUGCCUU-CUCGucCCGGUCA- -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 95015 | 0.66 | 0.797589 |
Target: 5'- uGAUGGGGCGGcuGuGCGGcaucucGCCGGUg -3' miRNA: 3'- gCUGCCCUGCCuuCuCGUCc-----CGGUCA- -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 127918 | 0.66 | 0.797589 |
Target: 5'- cCGAgGGGGCGGGGauuCGGGGCguGUc -3' miRNA: 3'- -GCUgCCCUGCCUUcucGUCCCGguCA- -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 9740 | 0.66 | 0.806137 |
Target: 5'- --cCGGGugGGuagguGGGGGgGGGGUCAGa -3' miRNA: 3'- gcuGCCCugCC-----UUCUCgUCCCGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 23468 | 0.66 | 0.806137 |
Target: 5'- aCGuCGGGGCGGAGGGGUcu-GCCAu- -3' miRNA: 3'- -GCuGCCCUGCCUUCUCGuccCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 146744 | 0.66 | 0.806137 |
Target: 5'- aCGACGGGccGCGGAucGGGGgAGGGacgaUGGUc -3' miRNA: 3'- -GCUGCCC--UGCCU--UCUCgUCCCg---GUCA- -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 8437 | 0.66 | 0.814541 |
Target: 5'- aGAgGGGGCGGGugaaaAGCGGGGaCCuGa -3' miRNA: 3'- gCUgCCCUGCCUuc---UCGUCCC-GGuCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 55279 | 0.66 | 0.814541 |
Target: 5'- gCGGCGGuGGCGGcgacGAGGGCGGcGGCg--- -3' miRNA: 3'- -GCUGCC-CUGCC----UUCUCGUC-CCGguca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 178237 | 0.66 | 0.834076 |
Target: 5'- gGAUGGGACgacgaggccgucgagGGAagcgggcugaccGGAGaCGGGGUCGGUc -3' miRNA: 3'- gCUGCCCUG---------------CCU------------UCUC-GUCCCGGUCA- -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 86549 | 0.66 | 0.830885 |
Target: 5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3' miRNA: 3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 86381 | 0.66 | 0.830885 |
Target: 5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3' miRNA: 3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 86333 | 0.66 | 0.830885 |
Target: 5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3' miRNA: 3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 125737 | 0.66 | 0.830885 |
Target: 5'- aGGCGGaGGCGGGccgcGGGaCGGcGGCCGGc -3' miRNA: 3'- gCUGCC-CUGCCUu---CUC-GUC-CCGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 86189 | 0.66 | 0.830885 |
Target: 5'- cCGAgcCGGGACGGAu--GCuccGGGCCGc- -3' miRNA: 3'- -GCU--GCCCUGCCUucuCGu--CCCGGUca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 153518 | 0.66 | 0.822793 |
Target: 5'- cCGGCGcuauuGGuCGGGAGAGguGGGCg--- -3' miRNA: 3'- -GCUGC-----CCuGCCUUCUCguCCCGguca -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 78332 | 0.67 | 0.788904 |
Target: 5'- gCGACGGG-CGGAGGcGCcggaaugucGGCCAGc -3' miRNA: 3'- -GCUGCCCuGCCUUCuCGuc-------CCGGUCa -5' |
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10768 | 3' | -59.7 | NC_002794.1 | + | 70266 | 0.67 | 0.788904 |
Target: 5'- gCGACGGaggccgcgaaGGCcGGAGAGCAGG-CCGGg -3' miRNA: 3'- -GCUGCC----------CUGcCUUCUCGUCCcGGUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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